View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8018_high_7 (Length: 302)
Name: NF8018_high_7
Description: NF8018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8018_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 30864948 - 30864680
Alignment:
| Q |
16 |
atgaatctcgcggtgatatgtggatcaacgtctgatcgtgatcaaggactaaacatcactttgatgag---ctacaaatcaatctaaaaaatcaccatga |
112 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30864948 |
atgaatctcgctgtgatatgtggatcaacgtctgatcgtgatcaaggactaaacatcactttgatgatgaactacaaatcaatctaaaaaatcaccatga |
30864849 |
T |
|
| Q |
113 |
atatggaattaatttatgaaaccataatatcattattaattaccctaaaatgaaaggtaaataatattaataacattcaaaatgtataaagtagnnnnnn |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30864848 |
atatggaattaatttatgaaaccataatatcatgattaattaccctaaaattaaaggtgaataatattaataacattcaaaatgtataaagtag----aa |
30864753 |
T |
|
| Q |
213 |
nnnnnnnnnnnncatttaaattaaatactatactatagccgtactaacactaacaataggtgtgacagtggta |
285 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30864752 |
aaaaataaaaaacattaaaattaaatactatactatagccgtactaacactaacaataggtgtgacggtggta |
30864680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University