View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8018_low_1 (Length: 568)
Name: NF8018_low_1
Description: NF8018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8018_low_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 7 - 568
Target Start/End: Complemental strand, 44709764 - 44709213
Alignment:
| Q |
7 |
ccaatgagtgtagtcattgttaacaatatgaaagaatccccatctacaccttggcatcctctgtatcaatcctttcccaaaatggttgaaagccacagtt |
106 |
Q |
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| T |
44709764 |
ccaatgagtgtagtcattgttaacaatatgaaagaatccccatctacaccttggcatcctctgtatcaatcctttcccaaaatggttaaaagccacagtt |
44709665 |
T |
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| Q |
107 |
atttgcgagatttgatctcctgagaacccatcatttgctccaaataacataacctacaccacaagaaaaatcatttacnnnnnnnnnnnnnnnngcatgc |
206 |
Q |
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| T |
44709664 |
atttgcgagatttgatctcctgagaacccatcatttgctccaaataacataacctacaccacaagaaaaatcattta----------tatatatgcatgc |
44709575 |
T |
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| Q |
207 |
atgtaagcaaaagaataagtagatgagatgttgttaattacatcattatgacgcgtcatatggcagttggaaatggtaatagccgttgatcccgctacgg |
306 |
Q |
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| T |
44709574 |
atgtaagcaaaagaataagtagatgagatgttgttaattacatcattatgacgcgtcatatggcagttggaaatggtaatagccgttgatcccgctacgg |
44709475 |
T |
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| Q |
307 |
catcaaccaatccatcagcacaattccacattgaaatatgatctatccaaacatgactagctccaaacattgaaattgcatcaccatcactcgcactacg |
406 |
Q |
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| T |
44709474 |
catcaaccaatccatcagcacaattccacattgaaatatgatctatccaaacatgactagctccaaacattgaaattgcatcaccatcactcgcactacg |
44709375 |
T |
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| Q |
407 |
ggatccatagtgatccatcgagtctctgatttggccaccgctggnnnnnnnagtatcatggatatgtaacccatggatgattatgtttttcacgtattgc |
506 |
Q |
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| T |
44709374 |
ggatccatagtgatccatcgagtctctgatttggccaccgctggtttttttagtatcatggatatgtaacccatggatgattatgtttttcacgtattgc |
44709275 |
T |
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| Q |
507 |
aacgttatctgagcaccctcactaatatgaacgtttgcaccacgtgcatctatggtcttgtc |
568 |
Q |
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| T |
44709274 |
aacgttatctgagcaccctcactaatatgaacgtttgcaccacgtgcatctatggtcttgtc |
44709213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 398
Target Start/End: Original strand, 25007113 - 25007205
Alignment:
| Q |
306 |
gcatcaaccaatccatcagcacaattccacattgaaatatgatctatccaaacatgactagctccaaacattgaaattgcatcaccatcactc |
398 |
Q |
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| T |
25007113 |
gcatcaatcaaaccatcagtacaatttctcatggaaacatgatcaatccaaacattactagcaccaaagatggaaataccatcaccatcactc |
25007205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 2045795 - 2045705
Alignment:
| Q |
6 |
tccaatgagtgtagtcattgttaacaatatgaaagaatccccatctacaccttggcatcctctgtatcaatcctttcccaaaatggttgaa |
96 |
Q |
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| T |
2045795 |
tccaatgtgtgtaatcattgttcaaaacatggaaaaatccccatctgcatcttggcattctttgaatcaatccttgtccgaaatggttgaa |
2045705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 3224654 - 3224760
Alignment:
| Q |
6 |
tccaatgagtgtagtcattgttaacaatatgaaagaatccccatctacaccttggcatcctctgtatcaatcctttcccaaaatggttgaaagccacagt |
105 |
Q |
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| T |
3224654 |
tccaatgagtatagtcattgttcaaaacatgaacaaaaccatatctgcaccttggcattctttgaatcaatccttgtccaaagtggttgaatgctactgt |
3224753 |
T |
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| Q |
106 |
tatttgc |
112 |
Q |
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| T |
3224754 |
tatttgc |
3224760 |
T |
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