View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8018_low_12 (Length: 209)
Name: NF8018_low_12
Description: NF8018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8018_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 33337326 - 33337147
Alignment:
| Q |
10 |
tattattctctgatttcatatttaaaaaacctttttccctctcaaactacaaaaccaaaattaattatttatttacccttcagcactatatgtaaattat |
109 |
Q |
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| T |
33337326 |
tattattctctgatttcatatttaaaaaacctttttccctctcaaactacaaaaccaaaattaattatt-atttacccttcagcattatatgt----tat |
33337232 |
T |
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| Q |
110 |
aatatttatgcatgtatttacctggagtctcattaagagatcagaactgttcttagttttgaagcgattttcatgaaattgtttg |
194 |
Q |
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| T |
33337231 |
aatatttatgcatgtatttacctggagtctcattaagagatcagaactgttcttagttttgaagcgattttcatgaaattgtttg |
33337147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 106 - 194
Target Start/End: Original strand, 35130896 - 35130984
Alignment:
| Q |
106 |
ttataatatttatgcatgtatttacctggagtctcattaagagatcagaactgttcttagttttgaagcgattttcatgaaattgtttg |
194 |
Q |
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| T |
35130896 |
ttataatatttatgcatgtatttacctggagtctcattaagagatcagaactgttcttagttttgaagcgattgacatgaaattgtttg |
35130984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 35130748 - 35130819
Alignment:
| Q |
10 |
tattattctctgatttcatatttaaaaaacctttttccctctcaaactacaaaaccaaaattaattatttat |
81 |
Q |
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| T |
35130748 |
tattcttctctgatttcatatttaaaacacctttttccctttcaaactacaaaaccaaaattaagtatttat |
35130819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 22502056 - 22501990
Alignment:
| Q |
128 |
tacctggagtctcattaagagatcagaactgttcttagttttgaagcgattttcatgaaattgtttg |
194 |
Q |
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| T |
22502056 |
tacctgtaatctcattaagagatcagaactgtttttattgttgaagcgattttgattaaattgtttg |
22501990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 22502266 - 22502226
Alignment:
| Q |
37 |
aacctttttccctctcaaactacaaaaccaaaattaattat |
77 |
Q |
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| T |
22502266 |
aacctttttccctctcaaactgcaaaaccaaaattatttat |
22502226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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