View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8018_low_2 (Length: 529)
Name: NF8018_low_2
Description: NF8018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8018_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 10 - 511
Target Start/End: Original strand, 9242122 - 9242623
Alignment:
| Q |
10 |
gatggacatcactacatataccaatattgtcatgttacatgcctatctttttatttaattcacattcaaactagacatgatgtatagttcaatcaatagt |
109 |
Q |
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| T |
9242122 |
gatgaacatcactacatctaccaatattgtcatgttacatgcctatctttttatttaattcacattcaaactagacatgatgtatagttcaatcaatagt |
9242221 |
T |
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| Q |
110 |
ttattgcatgaaaaggacatttgttgttagttacacattacattttcagctaaaatttgttgcattttgttaaccatgaaaattcctattctcattttat |
209 |
Q |
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| T |
9242222 |
ttattgcatgaaaatgacatttgttgttagttacacattacattttcagctaaaatttgttgcattttgttaaccatgaaaattcctattctcattttat |
9242321 |
T |
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| Q |
210 |
ggaaaaataaattggacctaatctcattttagagagtatattttctctaatttggtgaaaacttaggtaagtattacttgttacaacatcttccttaaat |
309 |
Q |
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| T |
9242322 |
ggaaaaataaattggatctaatctcattttagagagtatattttctctaatttggtgaaaacttaggtaagtattacttgttgcaacatcttccttaaat |
9242421 |
T |
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| Q |
310 |
caaatgaaaatatagtatacacaaaatgaaaaagaaatgaatgaacacatggatctatcataccaaaagtagcaaagcaaagttgaaggtatcgactata |
409 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| || ||| | ||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
9242422 |
caaatgaaaatatagtatccacaaaatgaaaaagaaatgaatgaatacgtggttgcatcataccaaaagtaacaaagcagagttgaaggtatcgactata |
9242521 |
T |
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| Q |
410 |
acgaacaccttgcttggattcgtgaagatggacgagcaaccataaggtataaagctgccatatgaatgctattgtcaaacttattattccccatgtcctg |
509 |
Q |
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| T |
9242522 |
acgaacaccatccttggattcgtgaagatggacgagcaaccataaggtataaagctgccatatgaatgctattgtcaaacttattattccccatgtcctg |
9242621 |
T |
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| Q |
510 |
ca |
511 |
Q |
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| T |
9242622 |
ca |
9242623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 369 - 511
Target Start/End: Original strand, 9256928 - 9257073
Alignment:
| Q |
369 |
ataccaaaagtagcaaagcaaagttgaaggtatcgactataacgaacaccttgcttg---gattcgtgaagatggacgagcaaccataaggtataaagct |
465 |
Q |
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||||| ||||| || |||||||| |||||||||||||| || |||| ||| | || | |||||||||||||||||||||||||||||||| ||||| | |
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| T |
9256928 |
ataccgaaagtggcgaagcaaagctgaaggtatcgactgtagcgaataccgttctcgacggattcgtgaagatggacgagcaaccataaggtgtaaagtt |
9257027 |
T |
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| Q |
466 |
gccatatgaatgctattgtcaaacttattattccccatgtcctgca |
511 |
Q |
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| T |
9257028 |
gccatatgaatgctattgtcaagctcaatattccccatgtcctgca |
9257073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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