View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8018_low_4 (Length: 467)
Name: NF8018_low_4
Description: NF8018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8018_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 16 - 450
Target Start/End: Complemental strand, 4378730 - 4378297
Alignment:
| Q |
16 |
catcagtgttaaaagctttctgttctgtaggtttcttattggagggattaccatgcatgattattagggttttaactttaaactatcacataaatcattg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4378730 |
catcagtgttaaaagctttctgttctgtaggtttcttattggagggattaccatgcatgattattagggttttaactttaaactatcacataaatcattg |
4378631 |
T |
|
| Q |
116 |
gagttttcatatttctacctttacctagactatgtatatagacttataaatactattcacttaaaagtgatttgattctactgatataattaatcacttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4378630 |
gagttttcatatttctacctttacctagactatgtatatagacttataaatactattcacttaaaagtgatttgattctactgatataattaatcacttt |
4378531 |
T |
|
| Q |
216 |
tcactaaataaaattgacttgtcactgttttcacagttaaaagccttcttatacgtatttctcaacttatatcaagatgatgtcactcccatgtgatatg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4378530 |
tcactaaataaaattgacttgtcactgttttcacagttaaaagccttcttatacgtatttctcaacttatatcaagatgatgtcactcccatgtgatatg |
4378431 |
T |
|
| Q |
316 |
ata----tatactctttgaattgattatatgactaatcatctttaattagttggaaatttagtaacatataaagctcttgactcctttaatttgcttaag |
411 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4378430 |
atatatatatactctttgaattgattatatgactaatcatctttaattagttggaaatttagtaacatataaagctcttgactcc-----tttgcttaag |
4378336 |
T |
|
| Q |
412 |
atgtattttgatgagtatatatgaatagaagttaggaat |
450 |
Q |
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| T |
4378335 |
atgtattttgatgagtatatatgaatagaagttaggaat |
4378297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 31714604 - 31714496
Alignment:
| Q |
17 |
atcagtgttaaaagctttctgttctgtaggtttcttattggagggattaccatgcatgattattagggttttaactttaaactatcacataaatcattgg |
116 |
Q |
| |
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|||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||| |
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| T |
31714604 |
atcagtgttaaa-gctttctattgtgtaggtttcttattggagggattaccatgcatgattattatggtttgaactttaaactatcacataaatgattgg |
31714506 |
T |
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| Q |
117 |
agttttcata |
126 |
Q |
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|||||||||| |
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| T |
31714505 |
agttttcata |
31714496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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