View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8018_low_5 (Length: 452)
Name: NF8018_low_5
Description: NF8018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8018_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 52212549 - 52212994
Alignment:
| Q |
18 |
tgtgtgtgttttgctactattttgaattgaatcagatatannnnnnnacacgaatttatcggagt-tcacagattttgtgattttgttttcattattatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
52212549 |
tgtgtgtgttttgctactattttgaattgaatcagatatatttttttacacgaatttatcggtgtctcacagattttgtgattttgttttcattattatt |
52212648 |
T |
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| Q |
117 |
tagaacaagaatggaacaacttgcaagtttgtgatgtaaaactgtgctcaacataagtcattcactagatgaggcattcaacaaaattagtctttaattc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52212649 |
tagaacaagaatggaacaacttgcaagtttgtgatgtaaaactgtgctcaacataagtcattcactagatgaggcattcaacaaaattagtctttaattc |
52212748 |
T |
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| Q |
217 |
attcaattcaatgcatgaaaa----------tacacagaaacaaagtttgttgtggaattgtttgcattcttagacaatgttagattttcttattcctcc |
306 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52212749 |
attcaattcaatgcatgaaaatgaaaacgtttacacagaaacaaagtttgttgtggaattgtttgcattcttagacaatgttagattttcttattcctcc |
52212848 |
T |
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| Q |
307 |
ccctaccnnnnnnnnnnnnnnnnnnagctgggattttcgaaggtttctaactgccaagggtatgtttggatcgatgatataggatggagtgaaatggtat |
406 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52212849 |
ccctaccttttttatgtttttttttagctgggattttcgaaggtttctaactgccaagggtatgtttggatcgatgatataggatggagtgaaatggtat |
52212948 |
T |
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| Q |
407 |
gaaataatagtctagtcggattttgaaaaatagatgctatggaata |
452 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52212949 |
gaaataatagtctagtcggattttgaaaaatagatgctatggaata |
52212994 |
T |
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