View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8019_high_12 (Length: 342)

Name: NF8019_high_12
Description: NF8019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8019_high_12
NF8019_high_12
[»] chr4 (10 HSPs)
chr4 (19-330)||(24754736-24755044)
chr4 (26-178)||(24760350-24760501)
chr4 (21-180)||(16652471-16652629)
chr4 (21-180)||(24843719-24843871)
chr4 (246-330)||(24746700-24746785)
chr4 (21-180)||(24840261-24840413)
chr4 (21-68)||(12333112-12333159)
chr4 (21-68)||(12373853-12373900)
chr4 (132-178)||(12373739-12373785)
chr4 (135-179)||(24577489-24577533)
[»] chr7 (2 HSPs)
chr7 (21-66)||(24305034-24305079)
chr7 (123-171)||(16305196-16305244)
[»] scaffold1886 (1 HSPs)
scaffold1886 (138-180)||(1226-1268)
[»] chr6 (1 HSPs)
chr6 (21-58)||(13722165-13722202)


Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 24755044 - 24754736
Alignment:
Q  19 aatatcctcataataaaataaaatatgtaatattttctcaagatccaagaaacaaagccaagaacatatttattaaactcggtcctgatgctacaatttc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||| |||||||||||| |||||| ||    
T  24755044 aatatcctcataataaaataaaatatgtaatattttctcaagatccaagaaaaaaagtcaagaacatatt-attaaattcggtcctgatgttacaatatc 24754946  T
Q  119 agagcttaaaactcaatttaaacataaacaacaatccaccaaactttaaagaacaacataatgaaaataactatctgctttact--ctcttacactaaag 216  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  24754945 agagcctaaaactcaatttaaatataaacaacaatccaccaaactttaaagaacaacataatgaaaataactatctcctttactctctcttacactaaag 24754846  T
Q  217 gaaggaagctaagaaaggaaactaattaagttcagggacaagagacgcctacaccatcagtcgtcaacatgacactggttttggatgatatttattctaa 316  Q
    ||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24754845 gaaggaagctaagaaaggaaac----taagttcagggacaagagacgcctacaccatcagtcgtcaacatgacactggttttggatgatatttattctaa 24754750  T
Q  317 atcttcaagatatt 330  Q
    ||||| ||| ||||    
T  24754749 atctttaaggtatt 24754736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 26 - 178
Target Start/End: Complemental strand, 24760501 - 24760350
Alignment:
Q  26 tcataataaaataaaatatgtaatattttctcaagatccaagaaacaaagccaagaacatatttattaaactcggtcctgatgctacaatttcagagctt 125  Q
    |||||| ||||||||||||||||||||||||||||||||||||||  ||| ||||| |||||| |||||||||  | ||||||  ||||| ||||||  |    
T  24760501 tcataagaaaataaaatatgtaatattttctcaagatccaagaaaataagacaagagcatatt-attaaactcaatactgatgtcacaatatcagaggat 24760403  T
Q  126 aaaactcaatttaaacataaacaacaatccaccaaactttaaagaacaacata 178  Q
    | |||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  24760402 agaactcaatttaaacataaacaataatccaacaaactttaaagaacaacata 24760350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 16652629 - 16652471
Alignment:
Q  21 tatcctcataataaaataaaatatgtaatattttctcaagatccaagaaacaaagccaagaacatatttattaaactcggtcctgatgctacaatttcag 120  Q
    |||| |||||||||||||||||||||||||||||| || ||| | |||||  | | | |||||||||| |||||||||   |||||||  ||||| ||||    
T  16652629 tatcttcataataaaataaaatatgtaatattttcgcaggatactagaaaatatgtctagaacatatt-attaaactcaaccctgatgtcacaatatcag 16652531  T
Q  121 agcttaaaactcaatttaaacataaacaacaatccaccaaactttaaagaacaacataat 180  Q
    ||| || |||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  16652530 agcctagaactcaatttaaacataaacaataatccaacaaactttaaagaacaacataat 16652471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 24843871 - 24843719
Alignment:
Q  21 tatcctcataataaaataaaatatgtaatattttctcaagatccaagaaacaaagccaagaacatatttattaaactcggtcctgatgctacaatttcag 120  Q
    ||||||||||||||||||||||||||||||||||      |||||| |||  ||| |||| ||||||| ||||||||||||||| |||  ||||  ||||    
T  24843871 tatcctcataataaaataaaatatgtaatatttt------atccaacaaaataagtcaagtacatatt-attaaactcggtcctaatgtcacaacatcag 24843779  T
Q  121 agcttaaaactcaatttaaacataaacaacaatccaccaaactttaaagaacaacataat 180  Q
    ||| || ||||||||||||||||| |||| |||||| |||||||||||||||||||||||    
T  24843778 agcctagaactcaatttaaacatacacaataatccaacaaactttaaagaacaacataat 24843719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 246 - 330
Target Start/End: Complemental strand, 24746785 - 24746700
Alignment:
Q  246 gttcagggacaagagacgcctacaccatcagtcgtcaacatgacact-ggttttggatgatatttattctaaatcttcaagatatt 330  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||| ||||    
T  24746785 gttcagggacaagagacgcctacaccatcaatcgtcaacatgacactgggttttggatgatatttactctaaatcttcaaggtatt 24746700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 24840413 - 24840261
Alignment:
Q  21 tatcctcataataaaataaaatatgtaatattttctcaagatccaagaaacaaagccaagaacatatttattaaactcggtcctgatgctacaatttcag 120  Q
    |||||||| |||||||||||||||||||||||||      || ||| |||  ||| |||| ||||||| |||||||||||||||||||  || |  ||||    
T  24840413 tatcctcaaaataaaataaaatatgtaatatttt------attcaacaaaataagtcaagtacatatt-attaaactcggtcctgatgtcacgacatcag 24840321  T
Q  121 agcttaaaactcaatttaaacataaacaacaatccaccaaactttaaagaacaacataat 180  Q
    ||| || |||| |||| ||||||| |||| |||||| |||||||||||||||||||||||    
T  24840320 agcctagaacttaattgaaacatacacaataatccaacaaactttaaagaacaacataat 24840261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 12333159 - 12333112
Alignment:
Q  21 tatcctcataataaaataaaatatgtaatattttctcaagatccaaga 68  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||    
T  12333159 tatcctcacaataaaataaaatatgtaatgttttctcaagatccaaga 12333112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 12373900 - 12373853
Alignment:
Q  21 tatcctcataataaaataaaatatgtaatattttctcaagatccaaga 68  Q
    |||||||| |||||||||||||||||||| ||||||||||||| ||||    
T  12373900 tatcctcaaaataaaataaaatatgtaattttttctcaagatcaaaga 12373853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 12373785 - 12373739
Alignment:
Q  132 caatttaaacataaacaacaatccaccaaactttaaagaacaacata 178  Q
    |||||||||||||||||| |||||| |||| ||||||||| ||||||    
T  12373785 caatttaaacataaacaataatccaacaaattttaaagaaaaacata 12373739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 24577489 - 24577533
Alignment:
Q  135 tttaaacataaacaacaatccaccaaactttaaagaacaacataa 179  Q
    |||||||||||| ||||||||| ||||| || |||||||||||||    
T  24577489 tttaaacataaataacaatccaacaaacattcaagaacaacataa 24577533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 24305079 - 24305034
Alignment:
Q  21 tatcctcataataaaataaaatatgtaatattttctcaagatccaa 66  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||    
T  24305079 tatcctcgtaataaaataatatatgtaatattttctcaagatccaa 24305034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 16305244 - 16305196
Alignment:
Q  123 cttaaaactcaatttaaacataaacaacaatccaccaaactttaaagaa 171  Q
    |||||||| |||||||||||||||||  ||| || ||||||||||||||    
T  16305244 cttaaaacacaatttaaacataaacatgaatacaacaaactttaaagaa 16305196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1886 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1886
Description:

Target: scaffold1886; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 1268 - 1226
Alignment:
Q  138 aaacataaacaacaatccaccaaactttaaagaacaacataat 180  Q
    ||||||| |||| |||||| |||||||||||||||||||||||    
T  1268 aaacatacacaataatccaacaaactttaaagaacaacataat 1226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 13722202 - 13722165
Alignment:
Q  21 tatcctcataataaaataaaatatgtaatattttctca 58  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  13722202 tatcctcaaaataaaataaaatatgtaatgttttctca 13722165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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