View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8019_high_17 (Length: 280)
Name: NF8019_high_17
Description: NF8019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8019_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 47711216 - 47711463
Alignment:
| Q |
9 |
tagcagagaagccatgtttggagacgaaaatgggaatttctacaatttctcagttggtaaaaagtaaaaatattgattcaagggagcatgatggagttgg |
108 |
Q |
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| T |
47711216 |
tagcagtgaagccatgtttggagacgaaaatgggaatttctacaatttctcagttggtaaaaagtaaaaatattgattcaagggagcatgatggagttgg |
47711315 |
T |
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| Q |
109 |
ttttggtgcctcacagagttcaatttcattgactaatcagactcgtcttgaaaattctcctcagattaagtagttgtctgcctcagataaaagtactgcg |
208 |
Q |
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| T |
47711316 |
ttttggtgcctcacagagttcaatttcattgactaatcagac---tcttgaaaattctcctcagattaagtagttgtctgcctcagataaaagtactgcg |
47711412 |
T |
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| Q |
209 |
gcgaataatattactatgagaaagatgaggtgtaatatgcccccctaagtc |
259 |
Q |
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| T |
47711413 |
gcgaataatattactatgagaaagataaggtgtaatatgcccccctaagtc |
47711463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 43305795 - 43305559
Alignment:
| Q |
16 |
gaagccatgtttggagacgaaaatgggaatttctacaatttctcagttggtaaaaagtaaaaatattgattcaagggagcatgatggagttggttttggt |
115 |
Q |
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|||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| | |
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| T |
43305795 |
gaagccatctttggagccgaaaaggggaatttctacaatttctcagttggtaaaaagtaatactattgattcaagggagcatgatggagttggttttgat |
43305696 |
T |
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| Q |
116 |
gcctcacagagttcaatttcattgactaatcagactcgtcttgaaaattctcctcagattaagtagttgtctgcctcagataaaagtactgcggcgaata |
215 |
Q |
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||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
43305695 |
gcctcacagagttcaatgtcattgactaatcggactcgtcttgaaagttctcctcagattaagaagttgcctgcctcagataaaagtactgcggcgaata |
43305596 |
T |
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| Q |
216 |
atattactatgagaaagatgaggtgtaatatgccccc |
252 |
Q |
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|||||||| |||||||||||||||||||||||||||| |
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| T |
43305595 |
atattactgtgagaaagatgaggtgtaatatgccccc |
43305559 |
T |
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