View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8019_high_19 (Length: 269)
Name: NF8019_high_19
Description: NF8019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8019_high_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 10478968 - 10478730
Alignment:
| Q |
14 |
atatctttgtgtgaatatctctgggccatatggcatgcaaattgctcaacttctctcaaggttaatgaaggttgtatctnnnnnnnnnttgctatgatag |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10478968 |
atatctttgtgtgaatatctctgggccatatggcatgcaaatttctcaacttctctcaaggttaatgaaggttgtatctacaaaaaaattgctatgatag |
10478869 |
T |
|
| Q |
114 |
attcatttctagcaataataataattcctcaaatcaaacaaacacaaaccaatgatcatttagtttttgttatttgacaatgtgtattctttggtgccgt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10478868 |
attcatttctagcaataataataattcctcaaatcaaacaaacacaaaccaatgatcatttagtttttgttatttgacaatgtgtattctttggtgccgt |
10478769 |
T |
|
| Q |
214 |
ttagggtgggagaccacattaggtctcctaccatgagag |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10478768 |
ttagggtgggagaccacattaggtctcctaccatgagag |
10478730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 252
Target Start/End: Original strand, 26959110 - 26959153
Alignment:
| Q |
209 |
gccgtttagggtgggagaccacattaggtctcctaccatgagag |
252 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26959110 |
gccgtttaggatgggagaccacattaggtctcctaccatgagag |
26959153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 245
Target Start/End: Original strand, 25944827 - 25944866
Alignment:
| Q |
206 |
ggtgccgtttagggtgggagaccacattaggtctcctacc |
245 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25944827 |
ggtgccgtttaggatgggagaccacattaggtctcctacc |
25944866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 16494350 - 16494396
Alignment:
| Q |
206 |
ggtgccgtttagggtgggagaccacattaggtctcctaccatgagag |
252 |
Q |
| |
|
|||||||||||||||||||| | || |||||||||||||||||||| |
|
|
| T |
16494350 |
ggtgccgtttagggtgggagtcttcaataggtctcctaccatgagag |
16494396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 13431776 - 13431730
Alignment:
| Q |
206 |
ggtgccgtttagggtgggagaccacattaggtctcctaccatgagag |
252 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
13431776 |
ggtgccgtttagggtgggagacttcaataggtctcctaccatgagag |
13431730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 2981516 - 2981470
Alignment:
| Q |
206 |
ggtgccgtttagggtgggagaccacattaggtctcctaccatgagag |
252 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||| |||||| |
|
|
| T |
2981516 |
ggtgccgtttaaggtgggagacttcattaggtctcctaccgtgagag |
2981470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University