View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8019_high_23 (Length: 228)
Name: NF8019_high_23
Description: NF8019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8019_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 9489056 - 9488859
Alignment:
| Q |
20 |
acattgtctattgaactaactaacaatactcatcgcaaaagcttcactttgtcctgaaggtgaaagaaacacattgtagaaaaaatgaatgctcctagat |
119 |
Q |
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| T |
9489056 |
acattgtctattgaacttactaacaatactcatcgcaaaagcttcactttgtcctgaaggtgaaagaaacacattgtagaaaaaatgaatgctcctagat |
9488957 |
T |
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| Q |
120 |
caaatgttctattttttggcttcttcgaactcgcggttctgaagctggtcattgagttggtttacccaagcttttgtctccttagatttctctgctac |
217 |
Q |
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| T |
9488956 |
caaatgttctattttttggcttcttcgaactcgcggttctgaagctggtcattgggttggtttacccaagcttttgtctccttagatttctctgctac |
9488859 |
T |
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