View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8019_high_5 (Length: 416)
Name: NF8019_high_5
Description: NF8019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8019_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 401
Target Start/End: Complemental strand, 46182379 - 46181980
Alignment:
| Q |
13 |
aatatcttcagcgtgact-aagtcacacaggtgttaaacgctacgtgactaaaatcatgttgtgtgtgttaagttacgctgaattgtcacattaaactct |
111 |
Q |
| |
|
|||||||||||| ||| | ||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||| | |||||| |
|
|
| T |
46182379 |
aatatcttcagcatgatttaagtcacgtaggtgttaaacgttatgtgactaaaatcatgttgtgtgtgttaagttacgctgaatagtcacactgaactct |
46182280 |
T |
|
| Q |
112 |
agcgtc-----------gctgattttctttctgattttatttatgaacaagcaccgaaatcccaannnnnnnagnnnnnnngcacaagcaactccatatc |
200 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
46182279 |
agcgtgagttaactcatgctgattttctttctgactttatttatgaacaagcaccgaaatcccaatttttt-agaaaaaaagcacaagcaactccatatc |
46182181 |
T |
|
| Q |
201 |
caacagtggaagccgcataactgttcaagggccttcttcttatcggttccttagcacatcttgtcttctccttttccacgtgctacaacaattatatatg |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46182180 |
caatagtggaagccgcataactgttcaagggccttcttcttatcggttccttagcacatcttgtcttctccttttccacgtgctacaacaattatatatg |
46182081 |
T |
|
| Q |
301 |
tacaataacgcgtggcttgtttgtacatgtctttttgttcttgaagacaaaaaacatataaaagcatggatagcagtaggacacgaacgatgtgtgcaag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||| |
|
|
| T |
46182080 |
tacaataacgcgtggcttgtttgtacatgtctttttgttcttgaagacaaaaaacatataaaagcatggatagcagttcgacacgaatgatatgtgcaag |
46181981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 301 - 361
Target Start/End: Original strand, 50764291 - 50764351
Alignment:
| Q |
301 |
tacaataacgcgtggcttgtttgtacatgtctttttgttcttgaagacaaaaaacatataa |
361 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50764291 |
tacaaaaacgcgtggcttgtttgtccatgtctttttgttcttgtagacaaaaaacatataa |
50764351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University