View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8019_high_9 (Length: 352)
Name: NF8019_high_9
Description: NF8019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8019_high_9 |
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| [»] scaffold0864 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 56 - 336
Target Start/End: Original strand, 5264015 - 5264295
Alignment:
| Q |
56 |
tgaagattgaaatatttgaaaagtagtaattgttgaatgaaattaccctgacttgggtattttaaaccctgctatgctagctgcctgacgaagagcctct |
155 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||| | ||||| |||||||||||||||||||||||||||| |
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| T |
5264015 |
tgaagattgaaatatttgaaaagtagtaattgttgaataaaattacccgcggttgtctattacagacccttttatgctagctgcctgacgaagagcctct |
5264114 |
T |
|
| Q |
156 |
ctgcaactttgcaccatttccttctcgtttgaaattttgttcaaaagactttaaaaagatattccaaactctcctgtctgatgacgcacttcagatggtt |
255 |
Q |
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|| ||||||||||||| |||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5264115 |
ctccaactttgcaccaattccttctcgattgaaattttgttcaaaagattttgaaaagatattccaaactctcctgtctgatgacgcacttcagatggtt |
5264214 |
T |
|
| Q |
256 |
ctaaatggtagaacactgacacaaccttttgtcctatggttctataacacttcattattttttccaattcttccaaacacc |
336 |
Q |
| |
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||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| |||| |
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| T |
5264215 |
ctaaatggtagaacaatggcacaaccttttgtcctatggttctataacacttcattatttttttcacttcatccaagcacc |
5264295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 56 - 336
Target Start/End: Original strand, 5331546 - 5331823
Alignment:
| Q |
56 |
tgaagattgaaatatttgaaaagtagtaattgttgaatgaaattaccctgacttgggtattttaaaccctgctatgctagctgcctgacgaagagcctct |
155 |
Q |
| |
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||||||||||||||||||||||||| | ||||||||||| ||||| ||||||| |||||| ||||||| |||| ||||||| ||||||||||||||| |
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| T |
5331546 |
tgaagattgaaatatttgaaaagta---actgttgaatgaatttaccgtgacttgagtatttcaaacccttttatgttagctgcatgacgaagagcctct |
5331642 |
T |
|
| Q |
156 |
ctgcaactttgcaccatttccttctcgtttgaaattttgttcaaaagactttaaaaagatattccaaactctcctgtctgatgacgcacttcagatggtt |
255 |
Q |
| |
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|| ||||||||||||| || || ||||||||||||||||||||||| ||||| ||| || ||||||| |||||||||||||||||||||| |||||||| |
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| T |
5331643 |
ctccaactttgcaccaattgctcctcgtttgaaattttgttcaaaaaactttgaaataattttccaaaatctcctgtctgatgacgcactttagatggtt |
5331742 |
T |
|
| Q |
256 |
ctaaatggtagaacactgacacaaccttttgtcctatggttctataacacttcattattttttccaattcttccaaacacc |
336 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
5331743 |
ctaaatggtagaacactggcacaacctttagtcctatggttctataacacttcattatttttttcaattcatccaaacacc |
5331823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 138 - 336
Target Start/End: Original strand, 5184705 - 5184903
Alignment:
| Q |
138 |
gcctgacgaagagcctctctgcaactttgcaccatttccttctcgtttgaaattttgttcaaaagactttaaaaagatattccaaactctcctgtctgat |
237 |
Q |
| |
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|||| ||||||||||||||| |||| | |||||| ||||| ||||||| ||||||||||||||||||||| ||||| |||||||||||| |||||||||| |
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| T |
5184705 |
gcctcacgaagagcctctctccaacgtagcaccaattcctcctcgtttaaaattttgttcaaaagactttgaaaagctattccaaactcgcctgtctgat |
5184804 |
T |
|
| Q |
238 |
gacgcacttcagatggttctaaatggtagaacactgacacaaccttttgtcctatggttctataacacttcattattttttccaattcttccaaacacc |
336 |
Q |
| |
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|||| |||||||| || |||| |||||||||||||| ||||| ||||||||||||||| |||||||||||| ||||||||||| |||||||||| |
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| T |
5184805 |
gacgtacttcagaggggtctacatggtagaacactggaacaacaacttgtcctatggttctgcgacacttcattatcttttccaattcatccaaacacc |
5184903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 70 - 336
Target Start/End: Complemental strand, 5393438 - 5393172
Alignment:
| Q |
70 |
tttgaaaagtagtaattgttgaatgaaattaccctgacttgggtattttaaaccctgctatgctagctgcctgacgaagagcctctctgcaactttgcac |
169 |
Q |
| |
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|||||| | |||||||||||||| ||||||||| || || ||||| |||||||||||||||||||||| |||||||||| |||| |||||| || | |
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| T |
5393438 |
tttgaacaatagtaattgttgaacgaaattacctggaattcagtattaaaaaccctgctatgctagctgcccgacgaagagctgctctccaacttagctc |
5393339 |
T |
|
| Q |
170 |
catttccttctcgtttgaaattttgttcaaaagactttaaaaagatattccaaactctcctgtctgatgacgcacttcagatggttctaaatggtagaac |
269 |
Q |
| |
|
| |||| || ||||||| |||||||||||| ||||| |||||||||||||||||||||| |||||| ||||||||||| || ||| |||||||||| |
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| T |
5393338 |
taattccaccttgtttgaagttttgttcaaaaaactttgaaaagatattccaaactctcctttctgataacgcacttcagtaggggctacatggtagaac |
5393239 |
T |
|
| Q |
270 |
actgacacaaccttttgtcctatggttctataacacttcattattttttccaattcttccaaacacc |
336 |
Q |
| |
|
|| | |||||| || ||||||||||||| ||| |||| |||| |||||||||| |||||||||| |
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| T |
5393238 |
accggaacaaccacttctcctatggttctaccacagttcactattatttccaattcatccaaacacc |
5393172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 72 - 336
Target Start/End: Complemental strand, 5444425 - 5444161
Alignment:
| Q |
72 |
tgaaaagtagtaattgttgaatgaaattaccctgacttgggtattttaaaccctgctatgctagctgcctgacgaagagcctctctgcaactttgcacca |
171 |
Q |
| |
|
||||||| |||| ||||||||||||||||||| ||||| |||| ||||||||| ||| | ||||||| ||||||||||| | | |||||| |||||| |
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|
| T |
5444425 |
tgaaaagaagtagttgttgaatgaaattacccggacttcactattggaaaccctgcgatgtttgctgcctcacgaagagcctttttccaacttagcacca |
5444326 |
T |
|
| Q |
172 |
tttccttctcgtttgaaattttgttcaaaagactttaaaaagatattccaaactctcctgtctgatgacgcacttcagatggttctaaatggtagaacac |
271 |
Q |
| |
|
|| || || |||| || ||| |||||||||| || ||||| ||||||||||| |||| || ||| |||||||||||| || |||| | |||||||||| |
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| T |
5444325 |
atttctccttttttggaactttcttcaaaagacgttgaaaagctattccaaactttcctctcggattacgcacttcagagggatctacacggtagaacac |
5444226 |
T |
|
| Q |
272 |
tgacacaaccttttgtcctatggttctataacacttcattattttttccaattcttccaaacacc |
336 |
Q |
| |
|
|| ||||||| |||||||||| || || ||| ||||||||||| ||||||| | |||||||| |
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|
| T |
5444225 |
tggcacaaccacttgtcctatgtttttacgacaattcattattttcaccaattcattcaaacacc |
5444161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 143 - 325
Target Start/End: Complemental strand, 5394594 - 5394412
Alignment:
| Q |
143 |
acgaagagcctctctgcaactttgcaccatttccttctcgtttgaaattttgttcaaaagactttaaaaagatattccaaactctcctgtctgatgacgc |
242 |
Q |
| |
|
||||||||||||| | ||| || || ||| |||| ||||||| ||||| ||||||||||||||| ||| | |||||||||| ||| |||||| ||| |
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| T |
5394594 |
acgaagagcctctttccaatttagcgccaattccacctcgtttaaaattctgttcaaaagactttcaaacgcccttccaaactcacctttctgattgcgc |
5394495 |
T |
|
| Q |
243 |
acttcagatggttctaaatggtagaacactgacacaaccttttgtcctatggttctataacacttcattattttttccaattc |
325 |
Q |
| |
|
|||||||| || |||| |||||||||||||| |||||| ||| || |||||||| | |||||||||||||||||||||||| |
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|
| T |
5394494 |
acttcagagggatctacatggtagaacactggaacaaccacttgcccaatggttctttgacacttcattattttttccaattc |
5394412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 209 - 336
Target Start/End: Original strand, 22589030 - 22589157
Alignment:
| Q |
209 |
aaaagatattccaaactctcctgtctgatgacgcacttcagatggttctaaatggtagaacactgacacaaccttttgtcctatggttctataacacttc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
22589030 |
aaaagatattccaaactctcctgtctgatggcgcacttcagatggttctaaatggtagaacacagacacaaccttttgtcctatggttctgtaacacttc |
22589129 |
T |
|
| Q |
309 |
attattttttccaattcttccaaacacc |
336 |
Q |
| |
|
||||||||||||||||| |||||||||| |
|
|
| T |
22589130 |
attattttttccaattcatccaaacacc |
22589157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 22588823 - 22588919
Alignment:
| Q |
56 |
tgaagattgaaatatttgaaaagtagtaattgttgaatgaaattaccctgacttgggtattttaaaccctgctatgctagctgcctgacgaagagcctct |
155 |
Q |
| |
|
||||||| ||||||||||||||||| | | ||||||||||||||| ||||||| |||||| ||||||||| ||||||||| ||||||||||||||||| |
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|
| T |
22588823 |
tgaagatggaaatatttgaaaagta---actattgaatgaaattaccgtgacttgagtatttcaaaccctgcaatgctagctacctgacgaagagcctct |
22588919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0864 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: scaffold0864
Description:
Target: scaffold0864; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 197 - 336
Target Start/End: Complemental strand, 4613 - 4474
Alignment:
| Q |
197 |
caaaagactttaaaaagatattccaaactctcctgtctgatgacgcacttcagatggttctaaatggtagaacactgacacaaccttttgtcctatggtt |
296 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| |
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|
| T |
4613 |
caaaagactttgaaaagatactccaaactctcctgtctgatggcgcacttcagatggttctaaatggtaaaacacaggcacaaccttttgtcctatggtt |
4514 |
T |
|
| Q |
297 |
ctataacacttcattattttttccaattcttccaaacacc |
336 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||||||||| |
|
|
| T |
4513 |
ctataacacatcattattttatccaattcatccaaacacc |
4474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0864; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 56 - 171
Target Start/End: Complemental strand, 4793 - 4681
Alignment:
| Q |
56 |
tgaagattgaaatatttgaaaagtagtaattgttgaatgaaattaccctgacttgggtattttaaaccctgctatgctagctgcctgacgaagagcctct |
155 |
Q |
| |
|
||||||||||||||||||||||||| | | ||||||||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||| ||||| |
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|
| T |
4793 |
tgaagattgaaatatttgaaaagta---actattgaatgaaattaccgtgacttgagtatttcaaaccctgcaatgctagctgcctgacgaagatcctct |
4697 |
T |
|
| Q |
156 |
ctgcaactttgcacca |
171 |
Q |
| |
|
|| ||| ||||||||| |
|
|
| T |
4696 |
ctccaattttgcacca |
4681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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