View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8019_low_1 (Length: 649)
Name: NF8019_low_1
Description: NF8019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8019_low_1 |
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| [»] scaffold0425 (2 HSPs) |
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Alignment Details
Target: scaffold0425 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 415 - 637
Target Start/End: Complemental strand, 4515 - 4293
Alignment:
| Q |
415 |
acaggttttattaattttgtttgttttttcaaaaggaaaaagaatgcaatatctaataatcttaatatatttcttttgattaatatcatttccttcttct |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4515 |
acaggttttattaattttgtttgttttttcaaaaggaaaaagaatgcactatctaataatcttaatatatttcttttgattaatatcatttccttcttct |
4416 |
T |
|
| Q |
515 |
ctcttttgatcattcatcgctcctcaccaacctcctcctagctagatgctttgcaacacaacttctgtgccgcactgccgttcctgcacattcacgacca |
614 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4415 |
ctcttttgatcattcatcgctcctcaccaacctcctcctagctagatgctttgcaacacaacttctgtgccgcactgttgttcctgcacattcacgacca |
4316 |
T |
|
| Q |
615 |
cggcaacaaatctgtctctgcta |
637 |
Q |
| |
|
||||||||||||||||| ||||| |
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|
| T |
4315 |
cggcaacaaatctgtctttgcta |
4293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 376
Target Start/End: Original strand, 3825 - 3854
Alignment:
| Q |
347 |
aggtggcatttcacatgggacacttgaaaa |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
3825 |
aggtggcatttcacatgggacacttgaaaa |
3854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 178; Significance: 1e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 420 - 621
Target Start/End: Complemental strand, 6852647 - 6852446
Alignment:
| Q |
420 |
ttttattaattttgtttgttttttcaaaaggaaaaagaatgcaatatctaataatcttaatatatttcttttgattaatatcatttccttcttctctctt |
519 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6852647 |
ttttattaattttgtttgttttttcaaaagggaaaagaatgcaatatctaataatcttaatatatttcttttgattaatatcatttccttcttctctctt |
6852548 |
T |
|
| Q |
520 |
ttgatcattcatcgctcctcaccaacctcctcctagctagatgctttgcaacacaacttctgtgccgcactgccgttcctgcacattcacgaccacggca |
619 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||| ||||||||||||||||||||| |||| |
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| T |
6852547 |
ttgatcattcatcgctcctcaccaacctcctcctagctagatgctttgcaacacaacttttgtgccacagtgctgttcctgcacattcacgaccatggca |
6852448 |
T |
|
| Q |
620 |
ac |
621 |
Q |
| |
|
|| |
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|
| T |
6852447 |
ac |
6852446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 21189919 - 21189747
Alignment:
| Q |
18 |
acaagggtcaaaagataagacaatatatcagagtaaattagactcaatttagaattcactgctgcaaaaatgatttttctcttgaagatttgatataatt |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | |
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|
| T |
21189919 |
acaagggtcaagagataagacaatatatcatagtaaattagactcaattcagaattcactgctgcaaaaatgatttttctcttgaagacttgatatatat |
21189820 |
T |
|
| Q |
118 |
catgtcaaagtaaattttgcgcatctagtcattaacatatatcagaaatgttattcttaataacatgcatttt |
190 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||| |||||| |
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|
| T |
21189819 |
catgtcaaagtaaattttgcacatctagtcattaacatatctcagaaatgttattcttaatagcatacatttt |
21189747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 3e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 34 - 190
Target Start/End: Original strand, 36466825 - 36466981
Alignment:
| Q |
34 |
aagacaatatatcagagtaaattagactcaatttagaattcactgctgcaaaaatgatttttctcttgaagatttgatataattcatgtcaaagtaaatt |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||| |
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| T |
36466825 |
aagacaatatatcagagtaaattagactcaattcagaattcactgctgcaaaaatgatttttctcttgaagactcgatatatgtcatgtcaaagtaaatt |
36466924 |
T |
|
| Q |
134 |
ttgcgcatctagtcattaacatatatcagaaatgttattcttaataacatgcatttt |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36466925 |
ttgcgcatctagtcattaacatatatcagaaatgttattcttaataacatgcatttt |
36466981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 226 - 348
Target Start/End: Original strand, 36466995 - 36467117
Alignment:
| Q |
226 |
tgatcaaacaattataatagatagcaggtggattttttgttaaataaagtaggcctaaatacaaatgtaccgtggcccccatatccataagatacaatct |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
36466995 |
tgatcaaacaattataatagatagcaggtggattttttgttaaataaagtaggcctaactacaaatgtaccatggcccccatatccataagatacaatct |
36467094 |
T |
|
| Q |
326 |
aacatttgtatatactttcaaag |
348 |
Q |
| |
|
||||||||||||||||||||||| |
|
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| T |
36467095 |
aacatttgtatatactttcaaag |
36467117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 8e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 30747468 - 30747296
Alignment:
| Q |
18 |
acaagggtcaaaagataagacaatatatcagagtaaattagactcaatttagaattcactgctgcaaaaatgatttttctcttgaagatttgatataatt |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| | |||||| | |
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| T |
30747468 |
acaagggtcaagagataagacaatatatcagagtaaattagactcaattcagaatttactgctgcaaaaatgatttttctcttgaagactcgatatatgt |
30747369 |
T |
|
| Q |
118 |
catgtcaaagtaaattttgcgcatctagtcattaacatatatcagaaatgttattcttaataacatgcatttt |
190 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30747368 |
catgttaaagtaaattttgcgcatctagttattaacatatatcagaaatgttattcttgataacatgcatttt |
30747296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 30768919 - 30768747
Alignment:
| Q |
18 |
acaagggtcaaaagataagacaatatatcagagtaaattagactcaatttagaattcactgctgcaaaaatgatttttctcttgaagatttgatataatt |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| | |||||| | |
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|
| T |
30768919 |
acaagggtcaagagataagacaatatatcagagtaaattagactcaattcagaatttactgctgcaaaaatgatttttctcttgaagactcgatatatgt |
30768820 |
T |
|
| Q |
118 |
catgtcaaagtaaattttgcgcatctagtcattaacatatatcagaaatgttattcttaataacatgcatttt |
190 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
30768819 |
catgttaaagtaaattttgcgcatctagttattaacatatatcagaaatgttattcttgataacatgcatttt |
30768747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 4e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 417 - 524
Target Start/End: Complemental strand, 325627 - 325520
Alignment:
| Q |
417 |
aggttttattaattttgtttgttttttcaaaaggaaaaagaatgcaatatctaataatcttaatatatttcttttgattaatatcatttccttcttctct |
516 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
325627 |
aggttttattaattttgtttggtttttcaaaaggaaaaagaatgcaatatctaataatcgtaatatatttcttttgattaatatcatttccttcttctct |
325528 |
T |
|
| Q |
517 |
cttttgat |
524 |
Q |
| |
|
|||||||| |
|
|
| T |
325527 |
cttttgat |
325520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 376 - 472
Target Start/End: Complemental strand, 34853346 - 34853249
Alignment:
| Q |
376 |
accatgggaaagtcactttttacc-ccacatgtgagtgaaacaggttttattaattttgtttgttttttcaaaaggaaaaagaatgcaatatctaata |
472 |
Q |
| |
|
||||| ||||||| |||||||| |||| ||| |||||||| ||||| | || ||||||||||||||||||||| |||||||||||| ||| ||||| |
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|
| T |
34853346 |
accataggaaagttgctttttactgccacttgtaagtgaaaccggtttcactatttttgtttgttttttcaaaagaaaaaagaatgcagtatttaata |
34853249 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 40568239 - 40568067
Alignment:
| Q |
18 |
acaagggtcaaaagataagacaatatatcagagtaaattaga--ctcaatttagaattcactgctgcaaaaatgatttttctcttgaagatttgatataa |
115 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||| | | ||||||| ||||||||||||||||||||||||||||||| ||||| | ||||| |
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|
| T |
40568239 |
acaaggttcaagcgataagacaatatatcagagtaaatcaaattctcaattcagaattcactgctgcaaaaatgatttttctcccgaagactcaatatat |
40568140 |
T |
|
| Q |
116 |
ttcatgtcaaagtaaattttgcgcatct--agtcattaacatatatcagaaatgttattcttaataacatgca |
186 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| | || || ||||||||| |
|
|
| T |
40568139 |
atcatgtcaaagtaaattttgcacatctagagtcattaatatatatcagaaatgtgaatcctactaacatgca |
40568067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 226 - 347
Target Start/End: Original strand, 41467083 - 41467203
Alignment:
| Q |
226 |
tgatcaaacaattataatagatagcaggtggattttttgttaaataaagtaggcctaaatacaaatgtaccgtggcccccatatccataagatacaatct |
325 |
Q |
| |
|
||||||||||| ||||||||||||| ||| | ||| ||||||||||||||||||| ||||||||||| | ||| |||||| ||||||| ||||||||| |
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|
| T |
41467083 |
tgatcaaacaaacataatagatagcaagtgaacatttagttaaataaagtaggcctagatacaaatgtaacatgg-ccccatgtccataatatacaatct |
41467181 |
T |
|
| Q |
326 |
aacatttgtatatactttcaaa |
347 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
41467182 |
aacatttgaatatactttcaaa |
41467203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 376 - 472
Target Start/End: Original strand, 31911575 - 31911672
Alignment:
| Q |
376 |
accatgggaaagtcactttttacc-ccacatgtgagtgaaacaggttttattaattttgtttgttttttcaaaaggaaaaagaatgcaatatctaata |
472 |
Q |
| |
|
||||||| ||||| |||||||| |||| ||| |||||||| ||||| | || |||||||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
31911575 |
accatggaaaagttgctttttactaccacttgtaagtgaaaccggtttcactatttttgtttgttttttcaaaaggaaaaagaatgcagtatttaata |
31911672 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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