View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8019_low_12 (Length: 347)

Name: NF8019_low_12
Description: NF8019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8019_low_12
NF8019_low_12
[»] scaffold0027 (1 HSPs)
scaffold0027 (1-210)||(18693-18904)
[»] chr1 (3 HSPs)
chr1 (116-210)||(51720147-51720241)
chr1 (1-43)||(51720106-51720148)
chr1 (280-325)||(51720310-51720355)
[»] chr3 (4 HSPs)
chr3 (127-210)||(2754259-2754342)
chr3 (127-210)||(39084386-39084469)
chr3 (142-209)||(52174028-52174095)
chr3 (142-210)||(52176003-52176071)
[»] chr7 (2 HSPs)
chr7 (145-210)||(25148811-25148876)
chr7 (142-209)||(34368553-34368620)
[»] chr5 (1 HSPs)
chr5 (127-210)||(13450193-13450276)
[»] chr8 (1 HSPs)
chr8 (1-30)||(43942422-43942451)


Alignment Details
Target: scaffold0027 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 18693 - 18904
Alignment:
Q  1 atatatattttttgatttagcaaccgtagaacagagaatacataagcnnnnnnnnnnnnn--agagaatacagatgcttttgacatgaattattttgcag 98  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||               ||||||||||||||||||||||||||||||||||||||    
T  18693 atatatattttttgatttagcaacagtagaacagagaatacagaagctttttttttttttttagagaatacagatgcttttgacatgaattattttgcag 18792  T
Q  99 atccggtgataggctttatttaatcaacttttcataattaagttactacttatcagatgtattaatctattttaaaataataatgaattgaaataaatgc 198  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18793 atccggtgataggctttatttaatcaacttttcataattaaattactacttattagatgtattaatctattttaaaataataatgaattgaaataaatgc 18892  T
Q  199 tgaaactcgaac 210  Q
    ||||||||||||    
T  18893 tgaaactcgaac 18904  T

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Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 51720147 - 51720241
Alignment:
Q  116 atttaatcaacttttcataattaagttactacttatcagatgtattaatctattttaaaataataatgaattgaaataaatgctgaaactcgaac 210  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51720147 atttaatcaacttttcataattaaattactacttattagatgtattaatctattttaaaataataatgaattgaaataaatgctgaaactcgaac 51720241  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 51720106 - 51720148
Alignment:
Q  1 atatatattttttgatttagcaaccgtagaacagagaatacat 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  51720106 atatatattttttgatttagcaacagtagaacagagaatacat 51720148  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 51720310 - 51720355
Alignment:
Q  280 cattagctacagtggaagttaacaactactagtatagtatcaccag 325  Q
    |||||||||||||  ||||||| |||||||||||||||||||||||    
T  51720310 cattagctacagtaaaagttaataactactagtatagtatcaccag 51720355  T

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Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 2754259 - 2754342
Alignment:
Q  127 ttttcataattaagttactacttatcagatgtattaatctattttaaaataataatgaattgaaataaatgctgaaactcgaac 210  Q
    |||||||||| ||  ||||||||||||||||||||||||||||| |||||||||||||||  ||||||||| | ||||||||||    
T  2754259 ttttcataataaaaatactacttatcagatgtattaatctatttcaaaataataatgaatctaaataaatgtttaaactcgaac 2754342  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 39084386 - 39084469
Alignment:
Q  127 ttttcataattaagttactacttatcagatgtattaatctattttaaaataataatgaattgaaataaatgctgaaactcgaac 210  Q
    |||||||||| ||  ||||||||||||||||||||||||||||| |||||||||||||||  ||||||||| | ||||||||||    
T  39084386 ttttcataataaaaatactacttatcagatgtattaatctatttcaaaataataatgaatctaaataaatgtttaaactcgaac 39084469  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 52174028 - 52174095
Alignment:
Q  142 tactacttatcagatgtattaatctattttaaaataataatgaattgaaataaatgctgaaactcgaa 209  Q
    |||||||||| ||||||||||| |||||| ||||||||||| |||  |||||||||||| ||||||||    
T  52174028 tactacttataagatgtattaacctatttcaaaataataatcaatctaaataaatgctggaactcgaa 52174095  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 52176003 - 52176071
Alignment:
Q  142 tactacttatcagatgtattaatctattttaaaataataatgaattgaaataaatgctgaaactcgaac 210  Q
    |||||||||| ||||||||||| |||||| ||||||||||| |||  |||||||||||  |||||||||    
T  52176003 tactacttataagatgtattaacctatttcaaaataataatcaatctaaataaatgctagaactcgaac 52176071  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 25148876 - 25148811
Alignment:
Q  145 tacttatcagatgtattaatctattttaaaataataatgaattgaaataaatgctgaaactcgaac 210  Q
    |||| ||||||||||||||||||||| |||||||||||||||  ||||||||| | ||||||||||    
T  25148876 tactaatcagatgtattaatctatttcaaaataataatgaatctaaataaatgtttaaactcgaac 25148811  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 34368620 - 34368553
Alignment:
Q  142 tactacttatcagatgtattaatctattttaaaataataatgaattgaaataaatgctgaaactcgaa 209  Q
    |||||||||| ||||||||||| |||||| ||||||||||| |||  |||||||||||| ||||||||    
T  34368620 tactacttataagatgtattaacctatttcaaaataataatcaatctaaataaatgctggaactcgaa 34368553  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 210
Target Start/End: Complemental strand, 13450276 - 13450193
Alignment:
Q  127 ttttcataattaagttactacttatcagatgtattaatctattttaaaataataatgaattgaaataaatgctgaaactcgaac 210  Q
    |||||||||| ||  ||||||||||||||||||||||||||||| |||||| || || ||  ||||||||| | ||||||||||    
T  13450276 ttttcataataaaaatactacttatcagatgtattaatctatttcaaaatattattggatctaaataaatgtttaaactcgaac 13450193  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 43942451 - 43942422
Alignment:
Q  1 atatatattttttgatttagcaaccgtaga 30  Q
    ||||||||||||||||||||||||||||||    
T  43942451 atatatattttttgatttagcaaccgtaga 43942422  T

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