View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8019_low_14 (Length: 315)
Name: NF8019_low_14
Description: NF8019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8019_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 267
Target Start/End: Complemental strand, 43016314 - 43016053
Alignment:
| Q |
7 |
tttcgtgttccactaatatttattcacttgatcttttttatcaaacacacacaacaaaattctctctnnnnnnn-caacattctcaactatttattcttt |
105 |
Q |
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| T |
43016314 |
tttcgtcttccactaatatttattcacttgatcttttttatcaaacacgcacaacaaaattctctctaaaaaaaacaacattctcaactatttattcttt |
43016215 |
T |
|
| Q |
106 |
caacttttatccatcttcataacgtgtgaagtttgtgcttctttttcttcattaaactgaatcaaagtgagtgtgaagttttcgctagtatctcaatttt |
205 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
43016214 |
caacttttatccatcttcataatgtgtgaagtttgtgcttctttttcttcattaaactaaatcaaagtgagtgtgaagttttcgctaatatctcaatttt |
43016115 |
T |
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| Q |
206 |
catcttcattttccatcattgattttattatttcagaagcatttatgcttgtgcagtttgtg |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43016114 |
catcttcattttccatcattgattttattatttcagaagcatttatgcttgtgcagtttgtg |
43016053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 18309893 - 18309822
Alignment:
| Q |
196 |
tctcaattttcatcttcattttccatcattgatttta-ttatttcagaagcattt-atgcttgtgcagtttgtg |
267 |
Q |
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|||||||||||||||||||||| |||||||||||||| || |||||| ||||||| |||||||||||||||||| |
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| T |
18309893 |
tctcaattttcatcttcatttt-catcattgattttatttttttcag-agcatttaatgcttgtgcagtttgtg |
18309822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 23735678 - 23735607
Alignment:
| Q |
196 |
tctcaattttcatcttcattttccatcattgatttta-ttatttcagaagcattt-atgcttgtgcagtttgtg |
267 |
Q |
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|||||||||||||||||||||| |||||||||||||| || |||||| ||||||| |||||||||||||||||| |
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| T |
23735678 |
tctcaattttcatcttcatttt-catcattgattttatttttttcag-agcatttaatgcttgtgcagtttgtg |
23735607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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