View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8019_low_15 (Length: 312)
Name: NF8019_low_15
Description: NF8019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8019_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 285
Target Start/End: Complemental strand, 48695458 - 48695185
Alignment:
| Q |
10 |
attattctcgcaagtaatttttgttgaaaagaatttaggggattcatgcactctcttaagtaatgaatgtttttacatttttatttgcttaaaaacaaag |
109 |
Q |
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| T |
48695458 |
attattctcgcaagtaatttttgttgaaaagaattcaggggattcatgcactctcttaagtaatgaatgtttttacatttttatttgcttaaaaacaaag |
48695359 |
T |
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| Q |
110 |
aagaaagtttaaatttgacaagtaaaatcaatgacttgacctaaaaaaggaaacaatgaattcaaaacgtttcagtacaaagacaaaatattttcgagta |
209 |
Q |
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| T |
48695358 |
aagaaagtttaaatttgacaagtaaaatcaatgacttgacctaaaaaaggaaacaatgaattcaaaacgtttcagtacaaagac--aatattttcgagta |
48695261 |
T |
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| Q |
210 |
caaccaattgnnnnnnngaagcaaatcgttttcaactaaagcatataaacatcataggtgttttcatgaacttaac |
285 |
Q |
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| T |
48695260 |
caaccaattgaaaaaaagaagtaaatccttttcaactaaagcatgtaaacatcttaggtgttttcatgaacttaac |
48695185 |
T |
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