View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8019_low_17 (Length: 289)
Name: NF8019_low_17
Description: NF8019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8019_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 4123641 - 4123371
Alignment:
| Q |
1 |
gaacttcttagttttgaggttgatcaaaatgagtgtgatttttatggaaaatgtgggccatttggtaactgtgataattctgttgtgccaatttgtagtt |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4123641 |
gaacttcttagatttgaggttgatcaaaatgagtgtgatttttatggaaaatgtgggccatttggtaactgtgataattctgttgtgccaatttgtagtt |
4123542 |
T |
|
| Q |
101 |
gttttgatgggtttgaggcaaagaattctgtggaatggagtttaggaaattggactaatggttgtgtgaggaaagagggattgaacttgaagtgtgagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4123541 |
gttttgatgggtttgaggcaaagaattctgtggaatggagtttaggaaattggactaatggttgtgtgaggaaagagggattgaacttgaagtgtgagat |
4123442 |
T |
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| Q |
201 |
ggtgaagaatggatcaactgtagttaagcaagatggatttaaggtgtatcataatatgaaagttcctgatt |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4123441 |
ggtgaagaatggatcaactgtagttaagcaagatggatttaaggtgtatcataatatgaaagttcctgatt |
4123371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 4152991 - 4152721
Alignment:
| Q |
1 |
gaacttcttagttttgaggttgatcaaaatgagtgtgatttttatggaaaatgtgggccatttggtaactgtgataattctgttgtgccaatttgtagtt |
100 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4152991 |
gaactttttagacttgaggttgatcaaaatgagtgtgatttttatggaaaatgtgggccatttggtaactgtgataattctactgtgccaatttgtagtt |
4152892 |
T |
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| Q |
101 |
gttttgatgggtttgaggcaaagaattctgtggaatggagtttaggaaattggactaatggttgtgtgaggaaagagggattgaacttgaagtgtgagat |
200 |
Q |
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| T |
4152891 |
gttttgatgggtttgagccaaagaattctgtggaatggagtttaggcaattggactaatggttgtgtgaggaaagaaggaatgaacttaaagtgtgagat |
4152792 |
T |
|
| Q |
201 |
ggtgaagaatggatcaactgtagttaagcaagatggatttaaggtgtatcataatatgaaagttcctgatt |
271 |
Q |
| |
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||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4152791 |
ggtgaagaatggatcaagtatagttaaacaagatggatttaaggtgtatcataatatgaaacctcctgatt |
4152721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 4144988 - 4144718
Alignment:
| Q |
1 |
gaacttcttagttttgaggttgatcaaaatgagtgtgatttttatggaaaatgtgggccatttggtaactgtgataattctgttgtgccaatttgtagtt |
100 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| ||||||||||||| |
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| T |
4144988 |
gaactttttagacttgaggttgatcaaaatgagtgtgatttttatggaaaatgtgggccatttggaaattgtgataattctagtgtaccaatttgtagtt |
4144889 |
T |
|
| Q |
101 |
gttttgatgggtttgaggcaaagaattctgtggaatggagtttaggaaattggactaatggttgtgtgaggaaagagggattgaacttgaagtgtgagat |
200 |
Q |
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|||||||||||||| || |||||||||| ||||| ||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| |
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| T |
4144888 |
gttttgatgggtttcagccaaagaattcggtggagtggagtttaggaaattggactaatggttgtgtgagaacagaaggattgaacttgaagtgtgagat |
4144789 |
T |
|
| Q |
201 |
ggtgaagaatggatcaactgtagttaagcaagatggatttaaggtgtatcataatatgaaagttcctgatt |
271 |
Q |
| |
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||||||||||||||||| | |||| || ||||||| |||| |||| |||||||||||||| |||||||| |
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| T |
4144788 |
ggtgaagaatggatcaaatctagtgaaacaagatgcatttttggtgcatcataatatgaaacctcctgatt |
4144718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 4134173 - 4133913
Alignment:
| Q |
14 |
ttgaggttgatcaaaatgagtgtgatttttatggaaaatgtgggccatttggtaactgtgataattctgttgtgccaa---tttgtagttgttttgatgg |
110 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| |||| |||||||||||||| | || |
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| T |
4134173 |
ttgaggtggatcaaaatgagtgtgatttttatggaaaatgtgggccatttggaaattgtgataattctagtgtaccaaatatttgtagttgttttaaagg |
4134074 |
T |
|
| Q |
111 |
gtttgaggcaaagaattctgtggaatggagtttaggaaattggactaatggttgtgtgaggaaagagggattgaacttgaagtgtgagatggtgaagaat |
210 |
Q |
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||||||| ||||||||| ||||||||||||| | | ||||||||||||||||||||||||| || ||| |||||||||||||||||||| |||||| |
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| T |
4134073 |
gtttgagccaaagaatttggtggaatggagttcaaggaattggactaatggttgtgtgaggacagcaggaatgaacttgaagtgtgagatgttgaagacc |
4133974 |
T |
|
| Q |
211 |
ggatcaactgtagttaagcaagatggatttaaggtgtatcataatatgaaagttcctgatt |
271 |
Q |
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||||||| || | |||| |||||||| ||| |||| ||| ||||||||||||||||||| |
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| T |
4133973 |
ggatcaaatgaatttaaacaagatggttttttggtgaatcggaatatgaaagttcctgatt |
4133913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 24 - 234
Target Start/End: Complemental strand, 4163321 - 4163108
Alignment:
| Q |
24 |
tcaaaatgagtgtgatttttatggaaaatgtgggccatttggtaactgtgataattctgttgtgccaa---tttgtagttgttttgatgggtttgaggca |
120 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||| || ||||||| |||| ||| |||| |||||||||||||| | ||||||||| || |
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| T |
4163321 |
tcaaaacgagtgtgatttttatggaaaatgtgggccatttggaaattgtgatatttctagtgtaccaaatatttgtagttgttttaaagggtttgagcca |
4163222 |
T |
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| Q |
121 |
aagaattctgtggaatggagtttaggaaattggactaatggttgtgtgaggaaagagggattgaacttgaagtgtgagatggtgaagaatggatcaactg |
220 |
Q |
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||||||| ||||| ||||||| | | ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| | |
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| T |
4163221 |
aagaatttggtggagtggagttcaaggaattggactaatggttgtgtgaggaaagaaggaatgaacttgaagtgtgagatggtgaagaatggatcaagcg |
4163122 |
T |
|
| Q |
221 |
tagttaagcaagat |
234 |
Q |
| |
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||||||| |||||| |
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| T |
4163121 |
tagttaaacaagat |
4163108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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