View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8019_low_18 (Length: 287)
Name: NF8019_low_18
Description: NF8019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8019_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 44388220 - 44388426
Alignment:
| Q |
17 |
catgtcataccagccagttcctagaacacaaaagatgtccaaagctaagatgcaaaccaatcaagatcatnnnnnnnttggtgacctttcattaactttg |
116 |
Q |
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| T |
44388220 |
catgtcataccagccagttcctagaacacaaaagatgtccaaagctaagatgcaaaccaatcaagatcataaaaaaattggtgacctttcattaactttg |
44388319 |
T |
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| Q |
117 |
gagaagctttatgtgtgggaaaagaaactttatgaagaagtgttggtaaataattacttatatttaaaatatatagatatagatatgacttgtttctgat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44388320 |
gagaagctttatgtgtgggaaaagaaactttatgaagaagtgttggtaaataattacttatatttaaaatatatagatatagatatgacttgtttctgat |
44388419 |
T |
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| Q |
217 |
agtttaa |
223 |
Q |
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||||||| |
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| T |
44388420 |
agtttaa |
44388426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 219 - 282
Target Start/End: Original strand, 44388448 - 44388511
Alignment:
| Q |
219 |
tttaattttatttttcctaaacaattttgatgacagggtgaagaaaaacttagaattctctatg |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44388448 |
tttaattttatttttcctaaacaattttgatgacagggtgaagaaaaacttagaattctctatg |
44388511 |
T |
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