View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8019_low_20 (Length: 271)
Name: NF8019_low_20
Description: NF8019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8019_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 8289653 - 8289895
Alignment:
| Q |
16 |
aacaaagagtatagtaattatagcttagtttgttttagcattaccggtgtgtttcaatttttaatttaattatatgannnnnnnn----ccatcttgaat |
111 |
Q |
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| T |
8289653 |
aacaaagagtatagtaattatagcttagtttgttttagcattaccggtgtgtttcaatttttaatttaattatatgattttttttttttccatcttgaat |
8289752 |
T |
|
| Q |
112 |
aaattgataggaaatatataaacttggagctcgtagaattgctgtactgggtgcaccaccaattggatgtgtgccatcacagagaactctcgcaggaggg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8289753 |
aaattgataggaaatatataaacttggagctcgtagaattgctgtactgggtgcaccaccaattggatgtgtgccatcacagagaactctcgcaggaggg |
8289852 |
T |
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| Q |
212 |
atagtaagagagtgtgcagaaaagtataatgatgcagcaaagt |
254 |
Q |
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| T |
8289853 |
atagtaagagagtgtgcagaaaagtataatgatgcagcaaagt |
8289895 |
T |
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