View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8019_low_4 (Length: 506)
Name: NF8019_low_4
Description: NF8019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8019_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Complemental strand, 45685560 - 45685086
Alignment:
| Q |
18 |
atttaattgatgcagctcacattggtattggattttgttgaaatagagtgaaaatgagacagacatatggttaaaccctgtgtctgaactacgcagcgaa |
117 |
Q |
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| T |
45685560 |
atttaattgatgcagctcacattggtattggattttgttgaaatagagtgaaaatgagacagacatatggttaaaccctgtgtctgaactacgcagcgaa |
45685461 |
T |
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| Q |
118 |
gtcnnnnnnn---ataggctcaaagcaaaaattacaaatataaatataggcaattctatccctatttacttgatatgatatgcctatacaataagtacat |
214 |
Q |
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| T |
45685460 |
gtcttttttttttataggctcaaagcaaaaattacaaatataaatataggcaattctatccctatttacttgatatgatatgcctatacaataagtacat |
45685361 |
T |
|
| Q |
215 |
atatcagaatatattttcaacagattcattatagattgataacctcttctctctagaattttcagcttacatgtggtccatttatgnnnnnnnngagcaa |
314 |
Q |
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| T |
45685360 |
atatcagaatatattttcaacagattcattatagattgataacctcttctctctagaattttcagcttacatgtggtccatttatgtttttgttgagcaa |
45685261 |
T |
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| Q |
315 |
acaaattttagatttctgaaaatttagacactgtatcactgcaaagattaataccatgagatcgtttacaaagagtaaagataaggcctgaaatgcgttt |
414 |
Q |
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| T |
45685260 |
acaaattttagatttctgaaaatttaaacac--tatcactgcaaagattaataccatgagatcgtttacaaagagtaaagataaggcctgaaatgcgttt |
45685163 |
T |
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| Q |
415 |
acaaagagttaggctcaatttaaaaacctaatatatttaaatataatatggaaagaaagataaggaactcgtcacag |
491 |
Q |
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| T |
45685162 |
acaaagagttaggctcaatttaaaaacctaatatatttaaatataatatggaaagaaagataaggaactcgtcacag |
45685086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 13178398 - 13178327
Alignment:
| Q |
167 |
attctatccctatttacttgatatgatatgcctatacaataagtacatatatcagaatatattttcaacaga |
238 |
Q |
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| T |
13178398 |
attctatccctatctacatgatatgatatgcttatacaataaatacaaagatcataatatatgttcaacaga |
13178327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 34392280 - 34392214
Alignment:
| Q |
170 |
ctatccctatttacttgatatgatatgcctatacaataagtacatatatcagaatatattttcaaca |
236 |
Q |
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| T |
34392280 |
ctatccctatttacttgatatgatattcctatacaataaatacaatggtcataatatattttcaaca |
34392214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 49931942 - 49931894
Alignment:
| Q |
180 |
ttacttgatatgatatgcctatacaataagtacatatatcagaatatat |
228 |
Q |
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|||| |||||||||||||||||||||||| |||| | |||| ||||||| |
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| T |
49931942 |
ttacatgatatgatatgcctatacaataaatacaaagatcataatatat |
49931894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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