View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8019_low_5 (Length: 421)
Name: NF8019_low_5
Description: NF8019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8019_low_5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 421
Target Start/End: Original strand, 9488482 - 9488884
Alignment:
| Q |
19 |
atcgaacagttgtggatgaatcctgcaaatgcgcgaacagaaagggaaagacgaagagaaaaaagagacattaaaatgctgcaggccaaaatataaacag |
118 |
Q |
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| T |
9488482 |
atcgaacagttgtggaagaatcctgcaaatgcgcgaacagaaagggaaagacgaagagaaaaaagagacattaaaatgctgcaggccaaaatataaacag |
9488581 |
T |
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| Q |
119 |
ataatcacgagcaccggacaatccaccattgtcatcaaaattgtcatgctcaagtttggatacggaagggaaagaaagatcggtgacaatgaagcaatta |
218 |
Q |
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| T |
9488582 |
ataatcacgagcaccggacaacccactatcgtcatcaaaattgtcatgctcaagtttggatacggaagggaaagaaagatcggtgacaatgaagcaatta |
9488681 |
T |
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| Q |
219 |
acatagatggtgaaacctgacgttacttagatgatagcagaaacaaaagaaagcacaaacctggtttgagtcgtataggccaagccaagtgcagaaaaga |
318 |
Q |
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| T |
9488682 |
acatcgatggtgaaacctgacgttacttagatgatagcagaaacaaaagaaagcacaaacctggtttgagtcgtataggccaagccaagtgcagaaaaga |
9488781 |
T |
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| Q |
319 |
ttctgaccaccgtgcagatttgggtcacgtgcatgtcccaatatccaccgctactgccatggcgccagagaaaatgtgcagcagagaaatctaaggagac |
418 |
Q |
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| T |
9488782 |
ttctgaccaccgtgcagatttgggtcacgtgcatgtccgaatatccaccgctactgccatggcgccagagaaaatgtgtagcagagaaatctaaggagac |
9488881 |
T |
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| Q |
419 |
aaa |
421 |
Q |
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| T |
9488882 |
aaa |
9488884 |
T |
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