View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8019_low_8 (Length: 400)
Name: NF8019_low_8
Description: NF8019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8019_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 346
Target Start/End: Original strand, 13644146 - 13644482
Alignment:
| Q |
13 |
aatatcaaagatcgaggcatgagaacactatccttaattatgcttgttcaacnnnnnnnnnn--cactatccttattgtgactatagtttaaaacgttaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13644146 |
aatatcaaagatcgaggcatgagaacactatccttaattatgcttgttcaacaaaaaaaaaaaacactatccttattgtgactatagtttaaaacgttaa |
13644245 |
T |
|
| Q |
111 |
tgatatataatgatttcaggatgatgatgataaagatgaagcgaactacctgtccaaggcttcaaaatacttctgcttcctaatctcaaagaacatatca |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13644246 |
tgatatataatgatttcaggatgatgatgataaagatgaagagaactacctgtccaaggcttcaaaatacttctgcttcctaatctcaaagaacatatca |
13644345 |
T |
|
| Q |
211 |
atcgaatgtcgattatta-nnnnnnnnnatagtagacccattgacatatttctcacactcatccaaatccccagcaaggatcttctcttcaaaatacttc |
309 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13644346 |
atcgaatgtcgattattattatttttttatagtagacccattgacatatttctcacactcatccaaatccccagcaaggatcttctcttcaaaatacttc |
13644445 |
T |
|
| Q |
310 |
aaattgaacaagagaccatattcttgctccaacctag |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13644446 |
aaattgaacaagagaccatattcttgctccaacctag |
13644482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 259 - 345
Target Start/End: Original strand, 13689892 - 13689978
Alignment:
| Q |
259 |
ttctcacactcatccaaatccccagcaaggatcttctcttcaaaatacttcaaattgaacaagagaccatattcttgctccaaccta |
345 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||| |||| |
|
|
| T |
13689892 |
ttctcacactcatcccaatctccagcaaggattttctcttcaaaatacttcaaattgaagaagagaccagattcttgctccacccta |
13689978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 284 - 346
Target Start/End: Original strand, 13641627 - 13641689
Alignment:
| Q |
284 |
caaggatcttctcttcaaaatacttcaaattgaacaagagaccatattcttgctccaacctag |
346 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||| | |||||||||||||||||| |
|
|
| T |
13641627 |
caaggatcttctcttcaaaatatttcaaatttaacaagagactagattcttgctccaacctag |
13641689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 13634843 - 13634894
Alignment:
| Q |
155 |
actacctgtccaaggcttcaaaatacttctgcttcctaatctcaaagaacat |
206 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
13634843 |
actacctgtccaaggcttcaagatacttttgcttcctaatctcaaagaacat |
13634894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 27532236 - 27532185
Alignment:
| Q |
155 |
actacctgtccaaggcttcaaaatacttctgcttcctaatctcaaagaacat |
206 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| ||| ||||| |
|
|
| T |
27532236 |
actacctgtccaaggcttccaaatacttctgcttcctaatctgaaaaaacat |
27532185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 344
Target Start/End: Complemental strand, 49954729 - 49954677
Alignment:
| Q |
292 |
ttctcttcaaaatacttcaaattgaacaagagaccatattcttgctccaacct |
344 |
Q |
| |
|
||||||||||||||||||| |||||||| | |||| |||||||||||||||| |
|
|
| T |
49954729 |
ttctcttcaaaatacttcatattgaacagaaaaccagattcttgctccaacct |
49954677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 47414833 - 47414873
Alignment:
| Q |
163 |
tccaaggcttcaaaatacttctgcttcctaatctcaaagaa |
203 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
47414833 |
tccaacgcttcaagatacttctgcttcctaatctcgaagaa |
47414873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University