View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8019_low_9 (Length: 370)

Name: NF8019_low_9
Description: NF8019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8019_low_9
NF8019_low_9
[»] chr3 (15 HSPs)
chr3 (1-337)||(23231546-23231882)
chr3 (1-353)||(23235438-23235790)
chr3 (74-237)||(23240114-23240271)
chr3 (154-298)||(23196200-23196344)
chr3 (185-347)||(23226399-23226561)
chr3 (140-279)||(7398834-7398973)
chr3 (172-291)||(37754050-37754169)
chr3 (140-247)||(2462548-2462655)
chr3 (171-291)||(37758434-37758554)
chr3 (162-277)||(7325081-7325196)
chr3 (11-102)||(23196387-23196478)
chr3 (160-238)||(12217313-12217391)
chr3 (180-277)||(7443696-7443793)
chr3 (9-58)||(23240070-23240119)
chr3 (163-223)||(759390-759450)
[»] chr6 (4 HSPs)
chr6 (162-350)||(19118192-19118380)
chr6 (162-308)||(19125543-19125689)
chr6 (160-277)||(24418152-24418269)
chr6 (195-262)||(17367595-17367662)
[»] chr2 (1 HSPs)
chr2 (170-274)||(33037401-33037505)
[»] chr7 (1 HSPs)
chr7 (135-278)||(27754888-27755031)
[»] chr5 (7 HSPs)
chr5 (162-285)||(20305089-20305212)
chr5 (162-285)||(20309493-20309616)
chr5 (162-285)||(20292229-20292352)
chr5 (133-208)||(23754720-23754795)
chr5 (133-208)||(23764941-23765016)
chr5 (133-208)||(23814789-23814864)
chr5 (133-208)||(23820175-23820250)
[»] scaffold0097 (1 HSPs)
scaffold0097 (172-277)||(33921-34026)


Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 23231546 - 23231882
Alignment:
Q  1 atagtggatcaaaaggatagtgtagttgggtcggtttaaccgttacagagttaaaaatggagcgacgcgggtgaaaaatggagtgaagccggtaaaagat 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23231546 atagtggatcaaaaggatagtgtagttgggtcggtttaactgttacagagttaaaaatggagcgaagcgggtgaaaaatggagtgaagccggtaaaagat 23231645  T
Q  101 tagcgttgacttcatatcataagtatcatcaaagtaggttaagatgaggttgcggcgggtggttgataagcgaaggtgtttctttgcgaaattgggatca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23231646 tagcgttgacttcatatcataagtatcatcaaagtaggttaagatgaggttgcggcgggtgattgataagcgaaggtgtttctttgcgaaattgggatca 23231745  T
Q  201 gagattagggtattgaaggacttactgagacatcgaagttgtaggaggagcttgacaggaagtctgcatagaatctctgccaccaattcgagcgggagat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23231746 gagattagggtattgaaggacttactgagacatcgaagttgtaggaggagcttgacaggaagtctgcatagaatctctgccaccaattcgagcgggagat 23231845  T
Q  301 ccggcagccgcgatgggtggaaagagttgaagagtga 337  Q
    |||||||||||||||||||||||||||||||||||||    
T  23231846 ccggcagccgcgatgggtggaaagagttgaagagtga 23231882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 23235438 - 23235790
Alignment:
Q  1 atagtggatcaaaaggatagtgtagttgggtcggtttaaccgttacagagttaaaaatggagcgacgcgggtgaaaaatggagtgaagccggtaaaagat 100  Q
    ||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||     
T  23235438 atagtgggtcaaaaagatagtgtagttgggtgggtttaaccgttacagagttaaaaatggagcgacttcggtgaaaaatggagtgaagccggtaaaagac 23235537  T
Q  101 tagcgttgacttcatatcataagtatcatcaaagtaggttaagatgaggttgcggcgggtggttgataagcgaaggtgtttctttgcgaaattgggatca 200  Q
    ||| |||| |||| |||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  23235538 tagtgttggcttcctatcaatagtatcatcaaagtaggttaagatgaggttgcggctggtggttgataagcgaaggtgtttcttagcgaaattgggatca 23235637  T
Q  201 gagattagggtattgaaggacttactgagacatcgaagttgtaggaggagcttgacaggaagtctgcatagaatctctgccaccaattcgagcgggagat 300  Q
    || || ||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23235638 gaaatcaggttattgaaggacttactaaggcatcgaagttgtaggaggagcttgacaggaagtctgcatagaatctctgccaccaattcgagcgggagat 23235737  T
Q  301 ccggcagccgcgatgggtggaaagagttgaagagtgaacgtaagagtgatctt 353  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  23235738 ccggcagccgcgatgggtcagaagagttgaagagtgaacgtaagagtgatctt 23235790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 74 - 237
Target Start/End: Original strand, 23240114 - 23240271
Alignment:
Q  74 aaaaatggagtgaagccggtaaaagattagcgttgacttcatatcataagtatcatcaaagtaggttaagatgaggttgcggcgggtggttgataagcga 173  Q
    |||||| ||||||||| ||||||||||||||||| ||||   |||||||   | ||||||||||||||||||||||||||  ||||||||||||||||||    
T  23240114 aaaaatagagtgaagcgggtaaaagattagcgttaactt---atcataa---taatcaaagtaggttaagatgaggttgcttcgggtggttgataagcga 23240207  T
Q  174 aggtgtttctttgcgaaattgggatcagagattagggtattgaaggacttactgagacatcgaa 237  Q
    |||||||||||  ||||||  |||||||| |||||||||||||||||||||||||| |||||||    
T  23240208 aggtgtttcttaacgaaataaggatcagaaattagggtattgaaggacttactgaggcatcgaa 23240271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 154 - 298
Target Start/End: Complemental strand, 23196344 - 23196200
Alignment:
Q  154 ggcgggtggttgataagcgaaggtgtttctttgcgaaattgggatcagagattagggtattgaaggacttactgagacatcgaagttgtaggaggagctt 253  Q
    |||| |||||||||||||||||||||||||| ||||| || |||||||| || |||||||||||| |||||||||| ||||| ||||||||||||| | |    
T  23196344 ggcgcgtggttgataagcgaaggtgtttcttagcgaactttggatcagaaataagggtattgaagaacttactgaggcatcgtagttgtaggaggaacat 23196245  T
Q  254 gacaggaagtctgcatagaatctctgccaccaattcgagcgggag 298  Q
    |||||| || |||||||||||||||||||| | ||||| ||||||    
T  23196244 gacagggagcctgcatagaatctctgccactagttcgaacgggag 23196200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 185 - 347
Target Start/End: Original strand, 23226399 - 23226561
Alignment:
Q  185 tgcgaaattgggatcagagattagggtattgaaggacttactgagacatcgaagttgtaggaggagcttgacaggaagtctgcatagaatctctgccacc 284  Q
    ||||||| |||||||||| |||||| |||| ||||||| |||||||||||||||||||| ||||| |||||| || || || |||||||||||||  | |    
T  23226399 tgcgaaagtgggatcagaaattaggatattcaaggactaactgagacatcgaagttgtaagaggatcttgacggggagcctacatagaatctctgagatc 23226498  T
Q  285 aattcgagcgggagatccggcagccgcgatgggtggaaagagttgaagagtgaacgtaagagt 347  Q
    |||||||| |||||||| |||||| | |  |||| | ||||| |||||||||||| |||||||    
T  23226499 aattcgagtgggagatcgggcagcggtggcgggtcggaagagatgaagagtgaacataagagt 23226561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 279
Target Start/End: Original strand, 7398834 - 7398973
Alignment:
Q  140 taagatgaggttgcggcgggtggttgataagcgaaggtgtttctttgcgaaattgggatcagagattagggtattgaaggacttactgagacatcgaagt 239  Q
    ||||||||||| | ||||| ||| ||| | | |||||||||||||||  || |||| ||||||||| |||||||||||| |||||| ||| |||||||||    
T  7398834 taagatgaggtggtggcggttggctgacatgtgaaggtgtttctttgtaaatttggaatcagagataagggtattgaagaacttacagaggcatcgaagt 7398933  T
Q  240 tgtaggaggagcttgacaggaagtctgcatagaatctctg 279  Q
    || ||||| ||||| || || || || || ||||||||||    
T  7398934 tgaaggagaagcttcactgggagcctacacagaatctctg 7398973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 291
Target Start/End: Original strand, 37754050 - 37754169
Alignment:
Q  172 gaaggtgtttctttgcgaaattgggatcagagattagggtattgaaggacttactgagacatcgaagttgtaggaggagcttgacaggaagtctgcatag 271  Q
    ||||||| ||||||||||| || ||||| ||||| || |  ||||||||||||| ||| || || ||||||| ||| | ||||||||| |||||||||||    
T  37754050 gaaggtgcttctttgcgaattttggatcggagataagagagttgaaggacttacagaggcaccggagttgtaagagtaacttgacagggagtctgcatag 37754149  T
Q  272 aatctctgccaccaattcga 291  Q
    ||| ||||| ||||||||||    
T  37754150 aatttctgcgaccaattcga 37754169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 140 - 247
Target Start/End: Complemental strand, 2462655 - 2462548
Alignment:
Q  140 taagatgaggttgcggcgggtggttgataagcgaaggtgtttctttgcgaaattgggatcagagattagggtattgaaggacttactgagacatcgaagt 239  Q
    ||||||||||| | |||||  |||||| | | ||||||| ||||||| ||| |||| ||||||||| |||||||||||| |||||| ||| |||||||||    
T  2462655 taagatgaggtggtggcggtaggttgacatgtgaaggtgcttctttgtgaatttggaatcagagataagggtattgaagaacttacagaggcatcgaagt 2462556  T
Q  240 tgtaggag 247  Q
    || |||||    
T  2462555 tgaaggag 2462548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 171 - 291
Target Start/End: Original strand, 37758434 - 37758554
Alignment:
Q  171 cgaaggtgtttctttgcgaaattgggatcagagattagggtattgaaggacttactgagacatcgaagttgtaggaggagcttgacaggaagtctgcata 270  Q
    ||||| || ||||| ||||| ||||||||  ||||||  | ||| |||||||| | ||| ||||| ||||||| ||| | |||||||||||| || ||||    
T  37758434 cgaagatgcttcttagcgaatttgggatccaagattaaagaattcaaggacttgcagaggcatcggagttgtaagagtaacttgacaggaagcctacata 37758533  T
Q  271 gaatctctgccaccaattcga 291  Q
    |||| ||||||||||| ||||    
T  37758534 gaatttctgccaccaaatcga 37758554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 277
Target Start/End: Original strand, 7325081 - 7325196
Alignment:
Q  162 gttgataagcgaaggtgtttctttgcgaaattgggatcagagattagggtattgaaggacttactgagacatcgaagttgtaggaggagcttgacaggaa 261  Q
    ||||||||  |||| ||||||||||||||| |||||||||| ||||  | ||||||| |||||| ||| || ||||| |||| ||| |  || |||||||    
T  7325081 gttgataattgaagatgtttctttgcgaaagtgggatcagaaattaaagaattgaagaacttacagaggcaccgaagctgtatgagtaatttcacaggaa 7325180  T
Q  262 gtctgcatagaatctc 277  Q
    | ||||| ||||||||    
T  7325181 gcctgcagagaatctc 7325196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 23196478 - 23196387
Alignment:
Q  11 aaaaggatagtgtagttgggtcggtttaaccgttacagagttaaaaatggagcgacgcgggtgaaaaatggagtgaagccggtaaaagatta 102  Q
    |||||||||| ||| |||||| |||||||| ||||||||||||||||||||   ||   |||||||| ||||||||||  ||||| ||||||    
T  23196478 aaaaggatagcgtatttgggtaggtttaacggttacagagttaaaaatggaatcacattggtgaaaagtggagtgaagtgggtaagagatta 23196387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 12217391 - 12217313
Alignment:
Q  160 tggttgataagcgaaggtgtttctttgcgaaattgggatcagagattagggtattgaaggacttactgagacatcgaag 238  Q
    ||||||| |||||||| ||||||| ||| || ||||||||||||||||  | |||||||||||||| ||| || |||||    
T  12217391 tggttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaag 12217313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 7443696 - 7443793
Alignment:
Q  180 ttctttgcgaaattgggatcagagattagggtattgaaggacttactgagacatcgaagttgtaggaggagcttgacaggaagtctgcatagaatctc 277  Q
    ||||| ||||||||||||||||| ||||  | ||||||| |||||| ||| || |||||||||| ||| |  || |||||||| ||||| ||||||||    
T  7443696 ttcttggcgaaattgggatcagaaattaaagaattgaagaacttacagaggcaccgaagttgtatgagtaatttcacaggaagcctgcagagaatctc 7443793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 23240070 - 23240119
Alignment:
Q  9 tcaaaaggatagtgtagttgggtcggtttaaccgttacagagttaaaaat 58  Q
    |||||||||||||| |||||| | |||||||| ||| |||||||||||||    
T  23240070 tcaaaaggatagtgcagttggatgggtttaactgttgcagagttaaaaat 23240119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 759390 - 759450
Alignment:
Q  163 ttgataagcgaaggtgtttctttgcgaaattgggatcagagattagggtattgaaggactt 223  Q
    |||| ||||||||||| |||||||| ||||||||||| |||| ||  | ||||||||||||    
T  759390 ttgacaagcgaaggtggttctttgcaaaattgggatcggagactatagaattgaaggactt 759450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 162 - 350
Target Start/End: Complemental strand, 19118380 - 19118192
Alignment:
Q  162 gttgataagcgaaggtgtttctttgcgaaattgggatcagagattagggtattgaaggacttactgagacatcgaagttgtaggaggagcttgacaggaa 261  Q
    ||||||| ||||||||||||||||||||| |||||||| || ||||||||||||| |||||||||  ||||||||||||||| ||||||||| || ||||    
T  19118380 gttgataggcgaaggtgtttctttgcgaatttgggatcggaaattagggtattgagggacttactttgacatcgaagttgtatgaggagcttcacgggaa 19118281  T
Q  262 gtctgcatagaatctctgccaccaattcgagcgggagatccggcagccgcgatgggtggaaagagttgaagagtgaacgtaagagtgat 350  Q
    | ||||| |||||||||||||||| ||||| ||||||||| |||||| ||| ||||  |||  || |||| ||||||| ||||||||||    
T  19118280 gcctgcacagaatctctgccaccagttcgaacgggagatcgggcagcggcggtggggagaagcagatgaaaagtgaacataagagtgat 19118192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 162 - 308
Target Start/End: Complemental strand, 19125689 - 19125543
Alignment:
Q  162 gttgataagcgaaggtgtttctttgcgaaattgggatcagagattagggtattgaaggacttactgagacatcgaagttgtaggaggagcttgacaggaa 261  Q
    ||||||| |||||||||||||||  ||||  |||||||||| ||||||||||||| |||||||||  ||||||||||||||| ||||||||| || ||||    
T  19125689 gttgataggcgaaggtgtttcttcacgaagatgggatcagaaattagggtattgagggacttactctgacatcgaagttgtacgaggagcttcacgggaa 19125590  T
Q  262 gtctgcatagaatctctgccaccaattcgagcgggagatccggcagc 308  Q
    | ||||| ||||||||||| |||| |||||  |||||||| ||||||    
T  19125589 gcctgcacagaatctctgcgaccagttcgaatgggagatcgggcagc 19125543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 277
Target Start/End: Original strand, 24418152 - 24418269
Alignment:
Q  160 tggttgataagcgaaggtgtttctttgcgaaattgggatcagagattagggtattgaaggacttactgagacatcgaagttgtaggaggagcttgacagg 259  Q
    ||||||| ||||||||||| || |||||||| ||||||||||||||||  | |||||||||||| | |||||| |||||||| ||||| | ||| || ||    
T  24418152 tggttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaacttcacggg 24418251  T
Q  260 aagtctgcatagaatctc 277  Q
    ||| || || ||||||||    
T  24418252 aagcctacacagaatctc 24418269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 17367662 - 17367595
Alignment:
Q  195 ggatcagagattagggtattgaaggacttactgagacatcgaagttgtaggaggagcttgacaggaag 262  Q
    |||||||| ||||||  |||||| |||||||| | |||||||||||||| |||||||||||| |||||    
T  17367662 ggatcagaaattaggtcattgaaagacttacttaaacatcgaagttgtatgaggagcttgacgggaag 17367595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 170 - 274
Target Start/End: Complemental strand, 33037505 - 33037401
Alignment:
Q  170 gcgaaggtgtttctttgcgaaattgggatcagagattagggtattgaaggacttactgagacatcgaagttgtaggaggagcttgacaggaagtctgcat 269  Q
    |||||| |||||||| ||||| || |||||||| ||||  | |||||  ||||||| ||||||||||||||| | |||||| || || ||||||||||||    
T  33037505 gcgaagatgtttcttagcgaatttaggatcagaaattaacgaattgatagacttacagagacatcgaagttgaatgaggagttttaccggaagtctgcat 33037406  T
Q  270 agaat 274  Q
    |||||    
T  33037405 agaat 33037401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 278
Target Start/End: Complemental strand, 27755031 - 27754888
Alignment:
Q  135 taggttaagatgaggttgcggcgggtggttgataagcgaaggtgtttctttgcgaaattgggatcagagattagggtattgaaggacttactgagacatc 234  Q
    |||||||  ||||| ||| ||||||||||||| ||||||||||||||||| || || || ||||| |||||||  | ||| |||||||||| ||| ||||    
T  27755031 taggttaccatgagattgtggcgggtggttgacaagcgaaggtgtttcttggcaaattttggatcggagattaaagaattaaaggacttacagaggcatc 27754932  T
Q  235 gaagttgtaggaggagcttgacaggaagtctgcatagaatctct 278  Q
     |||||| || || | ||| || |||||  |||| |||||||||    
T  27754931 aaagttgaagtagtaacttcacgggaagcatgcacagaatctct 27754888  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 285
Target Start/End: Complemental strand, 20305212 - 20305089
Alignment:
Q  162 gttgataagcgaaggtgtttctttgcgaaattgggatcagagattagggtattgaaggacttactgagacatcgaagttgtaggaggagcttgacaggaa 261  Q
    ||||| ||||||||||| ||||| ||||| |||||||| | |||||| | ||||||||||||    ||||| |||||||| | ||| | ||| |  ||||    
T  20305212 gttgacaagcgaaggtgcttcttggcgaatttgggatcggtgattagagaattgaaggacttggaaagacaccgaagttgcaagagtaacttaatgggaa 20305113  T
Q  262 gtctgcatagaatctctgccacca 285  Q
    ||||||||||||| ||||| ||||    
T  20305112 gtctgcatagaatttctgcaacca 20305089  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 285
Target Start/End: Complemental strand, 20309616 - 20309493
Alignment:
Q  162 gttgataagcgaaggtgtttctttgcgaaattgggatcagagattagggtattgaaggacttactgagacatcgaagttgtaggaggagcttgacaggaa 261  Q
    ||||| ||||||||||| ||||| ||||| |||||||| | |||||| | ||||||||||||    ||||| |||||||| | ||| | ||| |  ||||    
T  20309616 gttgacaagcgaaggtgcttcttggcgaatttgggatcggtgattagagaattgaaggacttggaaagacaccgaagttgcaagagtaacttaatgggaa 20309517  T
Q  262 gtctgcatagaatctctgccacca 285  Q
    ||||||||||||| ||||| ||||    
T  20309516 gtctgcatagaatttctgcaacca 20309493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 285
Target Start/End: Complemental strand, 20292352 - 20292229
Alignment:
Q  162 gttgataagcgaaggtgtttctttgcgaaattgggatcagagattagggtattgaaggacttactgagacatcgaagttgtaggaggagcttgacaggaa 261  Q
    ||||| ||||||||||| ||||| ||||| |||||||  | |||||| | ||||||||||||    ||||| |||||||| | ||| | ||| |  ||||    
T  20292352 gttgacaagcgaaggtgcttcttggcgaatttgggattggtgattagagaattgaaggacttggaaagacaccgaagttgcaagagtaacttaatgggaa 20292253  T
Q  262 gtctgcatagaatctctgccacca 285  Q
    ||||||||||||| ||||| ||||    
T  20292252 gtctgcatagaatttctgcaacca 20292229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 23754720 - 23754795
Alignment:
Q  133 agtaggttaagatgaggttgcggcgggtggttgataagcgaaggtgtttctttgcgaaattgggatcagagattag 208  Q
    |||||||||||||| || || |||  |||||||| ||||||| ||| ||||| ||||| ||||||||||| |||||    
T  23754720 agtaggttaagatgtggatgaggcatgtggttgagaagcgaaagtgcttcttggcgaacttgggatcagaaattag 23754795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 23764941 - 23765016
Alignment:
Q  133 agtaggttaagatgaggttgcggcgggtggttgataagcgaaggtgtttctttgcgaaattgggatcagagattag 208  Q
    |||||||||||||| || || |||  |||||||| ||||||| ||| ||||| ||||| ||||||||||| |||||    
T  23764941 agtaggttaagatgtggatgaggcatgtggttgagaagcgaaagtgcttcttggcgaatttgggatcagaaattag 23765016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 23814789 - 23814864
Alignment:
Q  133 agtaggttaagatgaggttgcggcgggtggttgataagcgaaggtgtttctttgcgaaattgggatcagagattag 208  Q
    |||||||||||||| || || |||  |||||||| ||||||| ||| ||||| ||||| ||||||||||| |||||    
T  23814789 agtaggttaagatgtggatgaggcatgtggttgagaagcgaaagtgcttcttggcgaatttgggatcagaaattag 23814864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 23820175 - 23820250
Alignment:
Q  133 agtaggttaagatgaggttgcggcgggtggttgataagcgaaggtgtttctttgcgaaattgggatcagagattag 208  Q
    |||||||||||||| || || |||  |||||||| ||||||| ||| ||||| ||||| ||||||||||| |||||    
T  23820175 agtaggttaagatgtggatgaggcatgtggttgagaagcgaaagtgcttcttggcgaacttgggatcagaaattag 23820250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 277
Target Start/End: Complemental strand, 34026 - 33921
Alignment:
Q  172 gaaggtgtttctttgcgaaattgggatcagagattagggtattgaaggacttactgagacatcgaagttgtaggaggagcttgacaggaagtctgcatag 271  Q
    |||||||||||||||||||||||||||| ||||| |  | ||  ||| |||||| ||| ||||| ||||||| ||| |  ||||| ||||| || |||||    
T  34026 gaaggtgtttctttgcgaaattgggatctgagatcaaagaatcaaagaacttacagaggcatcggagttgtatgagtaatttgaccggaagcctacatag 33927  T
Q  272 aatctc 277  Q
    ||||||    
T  33926 aatctc 33921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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