View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_high_11 (Length: 539)
Name: NF8020_high_11
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 40 - 521
Target Start/End: Complemental strand, 5740242 - 5739759
Alignment:
| Q |
40 |
aatatggctaaagataataagcaacaacaattaaatacaaaatactttatgaattatgagataacattatttaccaaaacataacataagcattaaaaca |
139 |
Q |
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| T |
5740242 |
aatatggctaaagataataagcaacaacaattaaatacaaaatgctttatgaattatgagataacattatttaccaaaacataacataagcattaaaaca |
5740143 |
T |
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| Q |
140 |
tgcatacaaaccttttgaagtttaataaaacgagacccatccatggttaacttaatcctaaaagttgatcgcaaaaactaattataacatcacccactgg |
239 |
Q |
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| T |
5740142 |
tgcatacaaaccttttgaagtttaataaaacgagacccatccatggttaacttaatcctaaaagttgatcgcaaaaactaattataacatcacccactgg |
5740043 |
T |
|
| Q |
240 |
ataaaaggatccttaattacccaccaataatgtttaaatatatgattcacatgttgcaccaaaacgtagtttgctagacaagaaaaagatacgtgagaaa |
339 |
Q |
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| T |
5740042 |
ataaaaggatccttaattacccaccaataatgtttaaatatatgattcacatgttgcaccaaaacctagtttgctagacaagaaaaagatacgtgagaaa |
5739943 |
T |
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| Q |
340 |
atagatggaaaattagaagagaataaga--annnnnnnnnagattggaaagaagaaaaatattatatgtaactttttccttctttacactagaaaatggg |
437 |
Q |
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| T |
5739942 |
atagatggaaaattagaagagaatgagattttatttttttagattggaaagaagaaaaatattatatgtaactttttccttctttacactagaaaatggg |
5739843 |
T |
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| Q |
438 |
gagataatgcatcttatttatttgatgagattacccttcttattccaggacccttaacttatgttattcttcttaatgccagtt |
521 |
Q |
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| T |
5739842 |
gagataatgcatcttatttatttgatgagattacccttcttattccaggacccctaacttatgttattcttcttaatgccagtt |
5739759 |
T |
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