View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_high_12 (Length: 505)
Name: NF8020_high_12
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 27 - 487
Target Start/End: Complemental strand, 39838804 - 39838344
Alignment:
| Q |
27 |
tttttgtgattgagagagaatttgatgaagtttggtttatggaattgagaatgtgagtaatggattgaatgaataaagaggaggagttgaagggcttaaa |
126 |
Q |
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| T |
39838804 |
tttttgtgattgagagagaatttgatgaagtttggtttatagaattgataatgtgagtaatggattgaatgaataaagaggaggagttgaagggcttaaa |
39838705 |
T |
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| Q |
127 |
tagaggagaattgcatgtgatagggtgcgggagttattgctctttcaataattatttaattgttaaattggttctgttattaaagtgtatagtttaataa |
226 |
Q |
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| T |
39838704 |
tagaggagaattgcatgtgatagggtgcgggagttattgctctttcaataattatttaattgttaaattggttctgttattaaagtgtatagtttaataa |
39838605 |
T |
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| Q |
227 |
acttcttatcatctttgannnnnnnngtttggatcaaatgagttaagtgtcaattgacattgaagtttgatgtctacactgtcaaatcatagtcctgaat |
326 |
Q |
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| T |
39838604 |
acttcttatcatctttgattttttttgtttggatcaaatgagttaagtgtcaattgacattgaagtttgatgtgtacactgtcaaatcatagtcctgaat |
39838505 |
T |
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| Q |
327 |
gttatatgtttttggtatgtgaatattttacaacattatattctgttctattattttattagattctagttgttaaaataatgtgggagggattagtagc |
426 |
Q |
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| T |
39838504 |
gttatatgtttttggtatgtgaatattttacaacattatattctgttctattattttattagattctagttgttaaaataatgtgggagggattagtagc |
39838405 |
T |
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| Q |
427 |
atatataaatattatgggggaataattctttacttggaaaggtttcttcaatcatcacatt |
487 |
Q |
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| T |
39838404 |
atatataaatattatgggggaataattctttacttggaaaggtttcttcaatcatcacatt |
39838344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 47 - 185
Target Start/End: Complemental strand, 31289764 - 31289626
Alignment:
| Q |
47 |
tttgatgaagtttggtttatggaattgagaatgtgagtaatggattgaatgaataaagaggaggagttgaagggcttaaatagaggagaattgcatgtga |
146 |
Q |
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| T |
31289764 |
tttgatgaactttgatttatgtaattgagaatgtgagtgttggattcaatgaataagaagaaggagttgaagggtttaaataaaggagaattgcaagtga |
31289665 |
T |
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| Q |
147 |
tagggtgcgggagttattgctctttcaataattatttaa |
185 |
Q |
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| T |
31289664 |
tggggtgggggagttattgctttttcattaattatttaa |
31289626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 323 - 420
Target Start/End: Original strand, 31291958 - 31292055
Alignment:
| Q |
323 |
gaatgttatatgtttttggtatgtgaatattttacaacattatattctgttctattattttattagattctagttgttaaaataatgtgggagggatt |
420 |
Q |
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| T |
31291958 |
gaatgttgtatgtttttggtacacgaatattttataacattgtattttgttctattattttattagattctagtcgttaaaataacgtgggagggatt |
31292055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 47 - 146
Target Start/End: Original strand, 31291016 - 31291112
Alignment:
| Q |
47 |
tttgatgaagtttggtttatggaattgagaatgtgagtaatggattgaatgaataaagaggaggagttgaagggcttaaatagaggagaattgcatgtga |
146 |
Q |
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| T |
31291016 |
tttgatgaactttggtttatgaaattgagaatatgagtgttggattgaatgaata---aggaggagtcgataggcttaaatagaggagaattgcatgtga |
31291112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 487
Target Start/End: Complemental strand, 31288744 - 31288702
Alignment:
| Q |
445 |
ggaataattctttacttggaaaggtttcttcaatcatcacatt |
487 |
Q |
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| T |
31288744 |
ggaataattctttatttggaaaggtttcttcaaccatcacatt |
31288702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 368
Target Start/End: Complemental strand, 31288890 - 31288845
Alignment:
| Q |
323 |
gaatgttatatgtttttggtatgtgaatattttacaacattatatt |
368 |
Q |
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| T |
31288890 |
gaatgttatatggttttggtatgtgaatgttttacaacattgtatt |
31288845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 419
Target Start/End: Complemental strand, 31288803 - 31288759
Alignment:
| Q |
375 |
tattattttattagattctagttgttaaaataatgtgggagggat |
419 |
Q |
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| T |
31288803 |
tattattttattagattatagttgttaaaataatatgggaaggat |
31288759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 487
Target Start/End: Original strand, 31292112 - 31292161
Alignment:
| Q |
438 |
ttatgggggaataattctttacttggaaaggtttcttcaatcatcacatt |
487 |
Q |
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| T |
31292112 |
ttatgggtgtataattcgttacttggaaaggtttctttgatcatcacatt |
31292161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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