View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8020_high_16 (Length: 447)
Name: NF8020_high_16
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_high_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 23599335 - 23598914
Alignment:
| Q |
1 |
tactcacagaacgagctaatatataactcaaacaaagtacaagaaacaaacacacgcacaatgccgaactggcagtgtataacattggtaactttgctga |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23599335 |
tactcagagaacgagctaatatataactcaaacaaagtacaagaaacaaacacacgcacaatgccgaactggcagtgtataacatttgtaactttgctga |
23599236 |
T |
|
| Q |
101 |
tagaactaaacaaagtgcaaaagtgatgctgatgaacaaagtgtacgtgatgctatgttctgttaactccaagtatgcatacaaagtcttataaatataa |
200 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23599235 |
taaaactaaacaaagtgcgaaagtgatgctgatgaacaaagtgtacgtgatgctatgttctgttaactccaagtatgcatacaatgtcttataat----- |
23599141 |
T |
|
| Q |
201 |
cacattcttcttctcactctatctccattggaaccacacctttacataaacacaattatgtcatacatgtaaagtacctaaatactccaaaagcaccttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23599140 |
-acattcttcttctcactctatctccattggaaccacacctttacataaacacagttatgtcatacatgtaaagtacctaaatactccaaaagcaccttt |
23599042 |
T |
|
| Q |
301 |
gcacacaaattactaacagtatagcaaacaacaaatacaagactaattaaagtctctttaattaccataagcaagttccattccaaccgagcaaattacc |
400 |
Q |
| |
|
|||||||| ||||| || ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23599041 |
gcacacaagttacttactgtatagcaaacaagaaataca--actaattaaagtctctttaattaccataagcaggttccattccaaccgagcaaattacc |
23598944 |
T |
|
| Q |
401 |
aattatatgttatgatccaagtcataaata |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
23598943 |
aattatatgttatgatccaagtcataaata |
23598914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University