View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_high_22 (Length: 373)
Name: NF8020_high_22
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_high_22 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 373
Target Start/End: Original strand, 34215874 - 34216236
Alignment:
| Q |
11 |
cagaacctgtgttaccattaacctactgaacaaccggatccgccagaatttcaaactaaaccgcgagctgattagaagaagcaatggccgaaacaacaga |
110 |
Q |
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| T |
34215874 |
cagaacctgtgttaccattaacctactgaactaccggatccgccagaatttcaaactaaaccgcgagctgtttagaagaagcaatggccgaaacaacaga |
34215973 |
T |
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| Q |
111 |
aactttggcttgtgagtgcaggcggggcgaacctgtatgcaccttagattgcgattcattgatctgggccagcgagggactcatctacctaacagaagcg |
210 |
Q |
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| T |
34215974 |
aattttggcttgtgagtgcaggcggggcgaacctgtatgcaccttagattgcgattcattgatctgggccagcgagggactcatctacctaacagaagcg |
34216073 |
T |
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| Q |
211 |
gagagagctaactcggcgttctcatgcacgacaacgtgctctattgaaaaggtaagcggaacagcagctacagaagtctctagaacgctcgtgtcctgag |
310 |
Q |
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| T |
34216074 |
gagagagctaactcggcattctcatgcacgtcaacgtgctctattgaaaaggtaagcggaacagcagctacagaagtctctagaacgctcgtgtcctgag |
34216173 |
T |
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| Q |
311 |
aatcctgaaagtgtttgctccactacatttgaatgcacgtcatcgtatgctactgcagtaacc |
373 |
Q |
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| T |
34216174 |
aatcctgaaagtgtttgctccactacatttgaatgcacgtcatcgtatgctactgcagtaacc |
34216236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 288
Target Start/End: Original strand, 34216354 - 34216467
Alignment:
| Q |
175 |
tgggccagcgagggactcatctacctaacagaagcggagagagctaactcggcgttctcatgcacgacaacgtgctctattgaaaaggtaagcggaacag |
274 |
Q |
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| T |
34216354 |
tgggcaagcgagggactcatctccttaacagaagcagaaacagtaaactcagagttctcatgcacgttgacgtgctcaactgaagaggggagccgaacgg |
34216453 |
T |
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| Q |
275 |
cagctacagaagtc |
288 |
Q |
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| T |
34216454 |
cagcgacagaagtc |
34216467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 11 - 300
Target Start/End: Complemental strand, 11212867 - 11212583
Alignment:
| Q |
11 |
cagaacctgtgttaccattaacctactgaacaaccggatccgccagaatttcaaactaaaccgcgagctgattagaagaagcaatggccgaaacaacaga |
110 |
Q |
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||||||||| |||||||||| ||| |||||| ||| || | |||||||||||| ||| || |||||||| | ||||| |||||||||||||||| |||| |
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| T |
11212867 |
cagaacctgcgttaccattagcctgctgaactaccagagctgccagaatttcagactgaatcgcgagctactcagaagtagcaatggccgaaacagcaga |
11212768 |
T |
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| Q |
111 |
aactttggcttgtgagtgcaggcggggcgaacctgtatgcaccttagattgcgattcattgatctgggccagcgagggactcatctacctaacagaagcg |
210 |
Q |
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| T |
11212767 |
aactttggcttgtgagtgcaggtggggcgaacctgtatgcacctcagattgagattcattgatctgggttggcgagggactcatctccctaacataagcg |
11212668 |
T |
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| Q |
211 |
gagagagctaactcggcgttctcatgcacgacaacgtgctctattgaaaaggtaagcggaacagcagctacagaagtctctagaacgctc |
300 |
Q |
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| T |
11212667 |
gagagagcta-----gcgttctcatgtgcgtcaacgcactctactaaaaagataagcggaacagcagctacagaagtctctagaacgctc |
11212583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 18485273 - 18485088
Alignment:
| Q |
11 |
cagaacctgtgttaccattaacctactgaacaaccggatccgccagaatttcaaactaaaccgcgagctgattagaagaagcaatggccgaaacaacaga |
110 |
Q |
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|||||| || |||||||||||||| |||| | |||||||| | ||||| || ||| ||| |||||||| | ||||| ||||||||||| |||| |||| |
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| T |
18485273 |
cagaacttgcgttaccattaacctgctgagccaccggatcttctagaatagcagactgaactgcgagctgctcagaagtagcaatggccgtaacagcaga |
18485174 |
T |
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| Q |
111 |
aactttggcttgtgagtgcaggcggggcgaacctgtatgcaccttagattgcgattcattgatctgggccagcgagggactcatct |
196 |
Q |
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|| ||||||||||||||||||| |||| |||| ||||||||||| |||||| |||||||||| |||||| |||||||| ||||||| |
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| T |
18485173 |
aattttggcttgtgagtgcaggtggggtgaacatgtatgcacctcagattgtgattcattgagctgggcaagcgaggggctcatct |
18485088 |
T |
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