View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_high_33 (Length: 299)
Name: NF8020_high_33
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 10 - 280
Target Start/End: Complemental strand, 10526082 - 10525812
Alignment:
| Q |
10 |
attatactagaatatggtggtagctaggtccaccctccacaattagagcatgccatatctaaaaatagaatatgtgctaaaagtagagtaggttgcactt |
109 |
Q |
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| T |
10526082 |
attatactagaatatggtggtagctaggtccaccctccacaattagagcatgtcatatctaaaaatagaatatgtgctaaaagtagagtaggttgcactt |
10525983 |
T |
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| Q |
110 |
gcacataactacaagaccttcatgttattctaattaattagcacaatgggttagtaagtatatctttatttacaaggaggtactttatttgatgaaataa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
10525982 |
gcacataactacaagaccttcatgttattctaattaattagcacaatgggttagtaagtatatcttaatttacaaggaggtactttatttgatgaaataa |
10525883 |
T |
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| Q |
210 |
attccttcgacctctttacagggtatatacatgcttgaattaagcattggtatatgctttgatgaaaagct |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10525882 |
attccttcgacctctttacagggtatatacatgcttgaattaagcattggtatatgctttgatgaaaagct |
10525812 |
T |
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