View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_high_34 (Length: 295)
Name: NF8020_high_34
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 26511997 - 26512264
Alignment:
| Q |
16 |
gttagagcaggtgctgtagttggtgtttttatatgggcacctgaagaagaaggacaatattatcctggtagggtttcaagatggtggcttaagaatagtt |
115 |
Q |
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| T |
26511997 |
gttagagcaggtgctgtagttggtgtttttatatgggcacctgaagaagaaggacaatattatcctggtagggtttcaagatggtggcttaagaatagtt |
26512096 |
T |
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| Q |
116 |
tggctcatctcgattcatctttgagaaatcttggtactcctcttgttaccaaaagatcaactgatagtgtttcttctttgttggaagttgttaaatccac |
215 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26512097 |
tggctcatcttgattcatctttgagaaatcttggtactcctcttgttaccaaaagatcaactgatagtgtttcttctttgttggaagttgttaaatccac |
26512196 |
T |
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| Q |
216 |
tggagccactcaaatcttcttcaaccatttatatggtcagtttttgtttattcttatcttatcttaat |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26512197 |
tggagccactcaaatcttcttcaaccatttatatggtcagtttttgtttattcttatcttatcttaat |
26512264 |
T |
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