View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_high_5 (Length: 622)
Name: NF8020_high_5
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 16 - 604
Target Start/End: Complemental strand, 45975678 - 45975073
Alignment:
| Q |
16 |
acatcacccacagatacggattcatccccagtatgttgtaaaatccatcacttatcttatccgtatacgacaagcacccactcacctgataaccaaaaat |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45975678 |
acatcacccacagatacggattcatccccagtatgttgtaaaatccatcacttatcttatccgtatatgacaagcacccactcacctgataaccaaaaat |
45975579 |
T |
|
| Q |
116 |
ggcatatttaatcacacaaatattattgaacgctagttgcaatatggttttaagttgttatctgaagctgcttcaactgcaatataaaagattttgagat |
215 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45975578 |
ggcatatttaatcacacaaatattaatgaacgctagttgcaatatggttttaagttgttatctgcagctgcttcaactgcaatataaaagattttgagat |
45975479 |
T |
|
| Q |
216 |
ctctgcaaccacatggcatttgtaaatttgattgcatcagcaatgttttgccgcaacataaagttcaatagttttaaaatgcagcgaaataatgcagtca |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45975478 |
ctctgcaaccacatggcatttgtaaatttgattgcatcaacaatgttttgccgcaacataaagttcaatagttttaaaatgcagcgaaataatgcagtca |
45975379 |
T |
|
| Q |
316 |
atatcacaaatcacaatcgccatgtcgttgcagattttgaagtctatgcatagtttaac-----------------cgcgatttaaaaccattggtgcga |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45975378 |
atatcacaaatcacaatcgccatgtcgttgcagattttgaagtctatgcatagtttaaccgcgtaagagccacaaccgcgatttaaaaccattggtgcga |
45975279 |
T |
|
| Q |
399 |
tggtgagacgtagttaaaaaatgaaatggttgtgcaatcttgtttagttttgtacccatagacgataagaaacagactcagcatcccaattttcagtgcc |
498 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45975278 |
tggtgagatgtagttaaaaaatgaaatggttgtgcaatcttgtttagttttgtacccatagacgataagaaacagactcagcatcccaattttcagtgcc |
45975179 |
T |
|
| Q |
499 |
aggagtgagaacaggctccgacacaagacttgccaaagaagcaagcctcttcgctaacgtaagctgcaggatatagctttcttcacacttcttcaccaac |
598 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45975178 |
aggagtgagaacaggctccgacacaagacttgccaaagaagcaagcctcttcgctaacgtaagctgcaggatatagctttcttcacacttcttcaccaac |
45975079 |
T |
|
| Q |
599 |
ccgtct |
604 |
Q |
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|||||| |
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| T |
45975078 |
ccgtct |
45975073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 28052887 - 28052935
Alignment:
| Q |
16 |
acatcacccacagatacggattcatccccagtatgttgtaaaatccatc |
64 |
Q |
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|||| ||||||| |||||||||||| |||| |||||| ||||||||||| |
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| T |
28052887 |
acataacccacaaatacggattcattcccaatatgttataaaatccatc |
28052935 |
T |
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