View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_high_9 (Length: 557)
Name: NF8020_high_9
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 150 - 546
Target Start/End: Original strand, 6809157 - 6809553
Alignment:
| Q |
150 |
gctagattcccataaaggagcatgcaacatgacaaattgctagtttgtgaaaatttctaaattatagggagggtaaataactaaatatggagaaataatc |
249 |
Q |
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| T |
6809157 |
gctagattcccataaaggagcatgcaacatgacaaattgctagtttgtgaaaatttctaaattatagggagggtaaataactaaatatggagaaataatc |
6809256 |
T |
|
| Q |
250 |
tttaccttataccacttgtattcccactgcatttgcattgccgcaccaggtacacgccaaggcttaaaccttctataagtagcagcaaggtgcaatgcac |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6809257 |
tttaccttataccacttgtattcccactgcatttgcattgccgcaccaggtacacgccaaggcttaaaccttctataagtagcagcaaggtgcaatgcac |
6809356 |
T |
|
| Q |
350 |
tgttaccattgatatcaacttgacgaaatgcagtttccttgattatactcctcttatttaacaaactgtatacatgaggttgcctattttctatggccaa |
449 |
Q |
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| T |
6809357 |
tgttaccattgatatcaacttgacgaaatgcagtttccttgattatactcctcttatttaacaaactgtatacatgaggttgcctattttctatggccaa |
6809456 |
T |
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| Q |
450 |
aagaacaacatttttgttctgactgtccacatcttgaatagccacagggtacacatctagaatcttttcaatcatttcagtcactcccatctctgct |
546 |
Q |
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| T |
6809457 |
aagaacaacatttttgttctgactgtccacatcttgaatagccacagggtacacatctagaatcttttcaatcatttcagtcactcccatctttgct |
6809553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 176 - 546
Target Start/End: Original strand, 6817318 - 6817682
Alignment:
| Q |
176 |
acatgacaaattgctagtttgtgaaaatttctaaattata-----gggagggtaaataactaaatatggagaaataatctttaccttataccacttgtat |
270 |
Q |
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| T |
6817318 |
acatgacaaattgctagtttgtgaagatttctaaactatatataagagaagacaaataattaaaaatggagaaatactctttaccttataccacttgtat |
6817417 |
T |
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| Q |
271 |
tcccactgcatttgcattgccgcaccaggtacacgccaaggcttaaaccttctataagtagcagcaaggtgcaatgcactgttaccattgatatcaactt |
370 |
Q |
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| T |
6817418 |
tcccactgcatttgcattgcagcaccaggtacacgccaaggcttaaaccttctataagtagcagcaaggtgcaatgcaccgttaccattga--------- |
6817508 |
T |
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| Q |
371 |
gacgaaatgcagtttccttgattatactcctcttatttaacaaactgtatacatgaggttgcctattttctatggccaaaagaacaacatttttgttctg |
470 |
Q |
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| T |
6817509 |
--cgaaatgcagtctccttgattattctcctctcatttaacaaactatatacatgaggttgcctattctctatggccaaaagaacaacatttttgttctg |
6817606 |
T |
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| Q |
471 |
actgtccacatcttgaatagccacagggtacacatctagaatcttttcaatcatttcagtcactcccatctctgct |
546 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6817607 |
actgaccacatcttgaatagccacagggtacacatctagaatcttttcaatcatttcagtcactcccatctttgct |
6817682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 252 - 546
Target Start/End: Original strand, 6831902 - 6832196
Alignment:
| Q |
252 |
taccttataccacttgtattcccactgcatttgcattgccgcaccaggtacacgccaaggcttaaaccttctataagtagcagcaaggtgcaatgcactg |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
6831902 |
taccttataccacttgtattcccactgcatttgcattgcagcaccgggcacacgccaaggcttaaacctcctataagtagcagcaagatgcaatgcactg |
6832001 |
T |
|
| Q |
352 |
ttaccattgatatcaacttgacgaaatgcagtttccttgattatactcctcttatttaacaaactgtatacatgaggttgcctattttctatggccaaaa |
451 |
Q |
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| T |
6832002 |
ttaccattgatatcaacttgacgaaatgcagtctctttgattacactcctcttatttaacaaactgtatacatgaggttgcctattctctatggccaaaa |
6832101 |
T |
|
| Q |
452 |
gaacaacatttttgttctgactgtccacatcttgaatagccacagggtacacatctagaatcttttcaatcatttcagtcactcccatctctgct |
546 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||| |
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| T |
6832102 |
gaacaacattcttgttctgactgtccacatcgtgaatagccacagggtacatgtctagaatattttcaatcatttcagtcactcccatctttgct |
6832196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 6809049 - 6809167
Alignment:
| Q |
21 |
atcgagagggaaaaacatactaaaggtgatcatattctccaacaaagatttgtcattgacaaagtaggtggatacttcatatcaataacatgattac--a |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6809049 |
atcgagagggaaaaacatactaaaggtgatcatattctccaacaaagatttgtcattgacaaagtaggtggatacttcatatcaataacatgattacaaa |
6809148 |
T |
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| Q |
119 |
aaaaaaaagctagattccc |
137 |
Q |
| |
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||||||||||||||||||| |
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| T |
6809149 |
aaaaaaaagctagattccc |
6809167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 125
Target Start/End: Original strand, 53587957 - 53587986
Alignment:
| Q |
96 |
ttcatatcaataacatgattacaaaaaaaa |
125 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
53587957 |
ttcatatcaataacatgattacaaaaaaaa |
53587986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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