View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_low_11 (Length: 551)
Name: NF8020_low_11
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 15 - 542
Target Start/End: Complemental strand, 39784700 - 39784176
Alignment:
| Q |
15 |
tatataatagccagagcttgatggggaatgtgagagcatattagcagagttttcatcaaattttaaaaaggttgtccctcaagnnnnnnngaaaagatta |
114 |
Q |
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| T |
39784700 |
tatataatagccagagcttgatggggaatgtgagagcatattagcagagttttcatcaaattttaaaaaggttgtccctcaagtttttttgaaaagatta |
39784601 |
T |
|
| Q |
115 |
aggaagagtttcttgctttttcttcagagatcttcttgttctgttgttttcttgttcagcagaaaattgtgatatatacttcaattcttacaaggttaga |
214 |
Q |
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| T |
39784600 |
aggaagagtttcttgctttttcttcagagatcttcttgttctgttgttttcttgttctgcagaaaattgtgatatatacttcaattcttacaaggttaga |
39784501 |
T |
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| Q |
215 |
acctatatttcatttctttcttctaccttatgctatggaattatgttatgtgctttcttattttctaacttgacttttgttacatgttttgctttaaatt |
314 |
Q |
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| T |
39784500 |
acctatatttcatttctttcttctaccttatgctatggaattatgttatgtgctttcttattttctaacttgacttttgtttcatgttttgctttaaatt |
39784401 |
T |
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| Q |
315 |
tttcacagttatatcatgtcatttgtgtgatagttttgttttgtttcatgcatgatgaatctggtttggcatgatgcaatgtcaatgcctagaatctaaa |
414 |
Q |
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| T |
39784400 |
tttcacagttatatcatgtcatttgtgtgatagttttgttttgtttcatgcatgatgaatatggtttggcatgatgcaatgtcaatgcctagaatctaaa |
39784301 |
T |
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| Q |
415 |
aaactatacaaaattgcattgtataaaactctc-tatccgtttaaaactttagagaaatagaaaaggttgtctgcactagtctaacaaagtagaaattca |
513 |
Q |
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| T |
39784300 |
aaactatacaaaattgcattgtataaaactctcttatccttttaaaactttagagtaatagaaaaggttgtctgc----gtctaacaaagtagaaattca |
39784205 |
T |
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| Q |
514 |
tcatgaagagctgcaaaattaaattaaat |
542 |
Q |
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| T |
39784204 |
tcatgaagagctgcaaaattaaattaaat |
39784176 |
T |
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