View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_low_13 (Length: 512)
Name: NF8020_low_13
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 19 - 459
Target Start/End: Complemental strand, 46914888 - 46914449
Alignment:
| Q |
19 |
aaatggtggtttatttagaaaataaacatatatatctagtaatttgaaaatggactaatattaagaaataattttttaatcaaattgatgtttatatata |
118 |
Q |
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| T |
46914888 |
aaatggtggtttatttagaaaataaacatatatatctagtaatttgaaaatgggctaatattgagagataattttttaatcaaattgatgtttatatata |
46914789 |
T |
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| Q |
119 |
agcacggaggaagtaactgtaatgacaaaaacttctcttggagaattacctccaaaggagcatttggtggatagagttaaattctcttcgtgaaaatagt |
218 |
Q |
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| T |
46914788 |
agcacggaggaagtaattgtaatgacaaaaacttctcttggagaattacctccaa-ggagcatttggtggatagagttaaattctcttcgtgaaaatagt |
46914690 |
T |
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| Q |
219 |
tccctagtataaaaacccttgtctcccctgctcctttactacttggtttatacaaacatgcttttgctgaccatatatcatgctgtgttctatgagtaac |
318 |
Q |
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| T |
46914689 |
tccttagtataaaaacccttgtctcccctgctcctttactacttggtatatacaaacatgcttttgctgaccatatatcatgctgtgttctatgagtaac |
46914590 |
T |
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| Q |
319 |
agaattttccaatatgttatgtacatgttatttaacaaaccgatgcacaaaatcccagtgcaacaagcacggttccattctattacacagggtagtagtg |
418 |
Q |
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| T |
46914589 |
agaattttccaatatgttatgtacatgttatttaacaaaccgatacacaaaatcccagtgcaacaagcacggttccattctattacacagggtagtagtg |
46914490 |
T |
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| Q |
419 |
aagctatgtgctagctagagagtatttgaccattattcagg |
459 |
Q |
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| T |
46914489 |
aatctatgtgctagctagagagtatttgaccattattcagg |
46914449 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 4813399 - 4813317
Alignment:
| Q |
52 |
atctagtaatttgaaaatggactaatattaagaaataattttttaatcaaattgatgtttatatataagcacggaggaagtaa |
134 |
Q |
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| T |
4813399 |
atctagtaatttgaaaaggggtttatatttagggacaattttttagtcaaatggatggttatatatagggacggaggaagtaa |
4813317 |
T |
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