View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_low_15 (Length: 490)
Name: NF8020_low_15
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 186 - 469
Target Start/End: Original strand, 12869645 - 12869928
Alignment:
| Q |
186 |
tagaagtttttaattattgattaatggtaatactcactgtttcttagtcttgtcttgatcttggtcatctccttctaactctgcttcgatttttgaaagt |
285 |
Q |
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| T |
12869645 |
tagaagtttttaattattgattaatggtaatactcactgtttcttagtcttgtcttgatcttggtcatctccttctaactctgcttcgatttttgaaagt |
12869744 |
T |
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| Q |
286 |
ttacttctatgctgttctaaggtgttgttaactgtggcttcattagacgacgaagatatcgaagaagaattcggtgacaccggaatgttaaacacctccg |
385 |
Q |
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| T |
12869745 |
ttacttctatgctgttctaaggtgttgttaactgtggcttcattagacgacgaagatatcgaagaagaattcggtgacaccggagtgttaaacacctcgg |
12869844 |
T |
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| Q |
386 |
atgagtccgggatgttagaactccggggtgacggaagagtgtgatgggttgttgttgttgtggcgacggtggaaacccaatccg |
469 |
Q |
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| T |
12869845 |
atgagtccgggatgttagaactcccgggtgacggaagagtgtgatgggttgttgttgttgtggcgacggtgggaacccaatccg |
12869928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 12869479 - 12869614
Alignment:
| Q |
21 |
aataaaaacagagacaaatgatgagaatagcaacgacaagaacagaaggatattttaagttcaatgaatagaaacagaaactgtttcatgtttcattaaa |
120 |
Q |
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| T |
12869479 |
aataaaaacagagacaaatgatgagaatagcaacgacaagaacagaaggatattttaagttcaatgaatagaaacagaaactgtttcatgtttcattaaa |
12869578 |
T |
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| Q |
121 |
atatctccactcatcacgcgttttcttaattgtcac |
156 |
Q |
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| T |
12869579 |
atatctccactcatcacgcgttttcttaattgtcac |
12869614 |
T |
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