View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_low_17 (Length: 451)
Name: NF8020_low_17
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 29469795 - 29470172
Alignment:
| Q |
1 |
gtcttctttaaaagaaatgtgttattttatcaagtgtgtatgtggtgtgtacgggcctataagagaaagaaggttgtaccaaagccataatccaatgatc |
100 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29469795 |
gtctcctttaaaagaaatgtgttatttcatcaagtgtgtatgtggtgtgtacgggcctataagagaaagaaggttgtaccaaagccataatccaatgatc |
29469894 |
T |
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| Q |
101 |
caatgaattggcagtaggcttggaacttggaagggaatgcgtcctttaccgtgaaggatatccaaattgtgatgtcagctgaacatgtcacaaattgccc |
200 |
Q |
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| T |
29469895 |
caatgaattggaagtaagcttgaaacttggaagggaatgcgtccttcaccgtgaaggatatccaaattgtgatgtcagctgaacatgtaacagagtgccc |
29469994 |
T |
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| Q |
201 |
cttcaagcatcgtgccttgaattctgattccttttatgtggcaaatcatggttcttgattttagtctcatgcacaattctttgttagtcctttggccacg |
300 |
Q |
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| T |
29469995 |
cttcaagcattgtgctttgaattttgattccttttatgtggcaaatcatggttcttgattttagtctaatgcacaattcattgttagtcctttggccacg |
29470094 |
T |
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| Q |
301 |
atattgttcacggtttgcatgttaattccacactaatttaagccaatgtatgtagaaccgccagagatggcatgataa |
378 |
Q |
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| T |
29470095 |
atattgttcacggtttgtatgttaatttcacactaattgaagccaatgtatgtagaaccgccagagatggcatgataa |
29470172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 139 - 438
Target Start/End: Original strand, 29462152 - 29462458
Alignment:
| Q |
139 |
gcgtcctttaccgtgaaggatatccaaattgtgatgtcagctgaacatgtcacaaattgccccttcaagcatcgtgccttgaattctgattccttttatg |
238 |
Q |
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| T |
29462152 |
gcgtccttcaccgcgaaggatatccaaattgtgatgtcaactaaacatgtcacaaggtgccccatcaagcaacgtgccttgaattttgattccctttatg |
29462251 |
T |
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| Q |
239 |
tggcaaatcatggttcttgattttagtctcatgcacaattctttgttagtcctttggccacgatattgttcacggtttg-------catgttaattccac |
331 |
Q |
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|||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| |
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| T |
29462252 |
aggcagatcatggttcttgattttattctaatgcacaattctttgttagtcctttggtcacgatattgttcacggtttgcattattcatgttaatttcac |
29462351 |
T |
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| Q |
332 |
actaatttaagccaatgtatgtagaaccgccagagatggcatgataagtgtcactgttgtagaaaataatgttttgttttgcatacatgtagatggagtt |
431 |
Q |
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||||||||||||| ||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29462352 |
actaatttaagcctatgtatgtagaactgctagagatggcatgataagtgttactgttgtagaaaataatgttttgttttgcatacatgtagatggagtt |
29462451 |
T |
|
| Q |
432 |
gtaattg |
438 |
Q |
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||||||| |
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| T |
29462452 |
gtaattg |
29462458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 377 - 438
Target Start/End: Original strand, 29478900 - 29478961
Alignment:
| Q |
377 |
aagtgtcactgttgtagaaaataatgttttgttttgcatacatgtagatggagttgtaattg |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29478900 |
aagtgtcactgttgtagaaaataatgttttgttttgcatacatgtagatggagttgtaattg |
29478961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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