View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8020_low_2 (Length: 782)
Name: NF8020_low_2
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_low_2 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
| [»] scaffold0061 (1 HSPs) |
| | |
|
| [»] scaffold0017 (1 HSPs) |
| | |
|
| [»] scaffold0567 (1 HSPs) |
| | |
|
| [»] scaffold0490 (1 HSPs) |
| | |
|
| [»] scaffold0125 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 715; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 715; E-Value: 0
Query Start/End: Original strand, 19 - 782
Target Start/End: Original strand, 34216528 - 34217299
Alignment:
| Q |
19 |
tcatcgtgtgctacctcggaaaccaattccaactcgggactagcggagtgaggaaaccttccctgtggaatttcatctgtaacattctgcaatgtcaagc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34216528 |
tcatcgtgtgctacctcggaaaccaattccaactcgggactagcggagtgaggaaaccttccctgtggaatttcatctgtaacattctgcaatgtcaagc |
34216627 |
T |
|
| Q |
119 |
tgaaagagttggcagaaacatcattaagtggagtagcagagagtgtctgttcttgcaacagagatatatttccttcaatgtttgttcccgccaatattct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34216628 |
tgaaagagttggcagaaacatcattaagtggtgtagaagagagtgtctgttcttgcaacagagacatatttccttcaatgtttgttcccgccaatattct |
34216727 |
T |
|
| Q |
219 |
tgcggtaagtcaaccaaacagatccagatagaagcgtgagtctgcttctgtgaatactaattaaaatccttcgtccattgggagagacgaaggagatctg |
318 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34216728 |
tgcggtaagtcaaccaaacggatccagatagaagcgtgagtctgcttctgtgaatactaattaaaatccttcgtccattgggagagacgaaggagatctg |
34216827 |
T |
|
| Q |
319 |
gcttcaaatcaatggtaccagccgaccaaattttttgtaagtcctctgccgactcaaaatgaaaatcgtaatagcccctgccaagcggtaccattttcca |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34216828 |
gcttcaaatcaatggtaccagccgaccaaattttttgtaagtcctctgccgactcaaaatgaaaatcgtaatagcccatgccaagcggtaccattttcca |
34216927 |
T |
|
| Q |
419 |
tttgttca--------catacttttccaagcttagtaaccaaatcatgctccatttatggcttgtcgcccttattcaaggttagacgtccccagagagca |
510 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34216928 |
tttattcacagtcttccatacttttccaagcttagtaaccaaatcatgctccatttatggcttgtcgcccttattcaaggtcagacgtccccagagagca |
34217027 |
T |
|
| Q |
511 |
ttttgacattccgccaatcctttcgagtattctacctgaccaattctgatacaaagcgcgtcacccttgaaacattatgattcatatatgttttagatct |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34217028 |
ttttgacattccgccaatcctttcgagtattctacctgaccaattctgatacaaagcgcgtcacccttgaaacattatgattcatatatgttttagatct |
34217127 |
T |
|
| Q |
611 |
atttcatgtatcactgcgagtatgatggaaaaatattttttactcgccggttcctatagataaaattcaccattgatgagaggaacaaaacagatggggt |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34217128 |
atttcatgtatcactgcgagtatgatggaaaaatattttttactcgccggttcctatagataaaattcaccattgatgagaggaacaaaacagatggggt |
34217227 |
T |
|
| Q |
711 |
ctcaccttatctctttagcaccaactaaaggcatgtcccatgtccgacaaaaatacaacaccaacacatgta |
782 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34217228 |
ctcaccttatctctttagcaccaactaaaggcatgtcccatgtccgacaaaaatacaacaccaacacatgta |
34217299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 366 - 421
Target Start/End: Original strand, 31437549 - 31437604
Alignment:
| Q |
366 |
gccgactcaaaatgaaaatcgtaatagcccctgccaagcggtaccattttccattt |
421 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
31437549 |
gccgactcaaaatgaaaatcataatatccccttccaagcgacaccattttccattt |
31437604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 14385448 - 14385482
Alignment:
| Q |
279 |
ttaaaatccttcgtccattgggagagacgaaggag |
313 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
14385448 |
ttaaaatccttcgtccattgggagaggcgaaggag |
14385482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 185 - 414
Target Start/End: Complemental strand, 21093584 - 21093356
Alignment:
| Q |
185 |
tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaacagatccagatagaagcgtgagtctgcttctgtgaatactaattaaaa |
284 |
Q |
| |
|
|||||||||||| || ||||| || |||||||||| ||||| || ||||| | |||||| || ||||| |||||||| ||||||||||| | | ||| |
|
|
| T |
21093584 |
tatttccttcaaagtacgttcctgctaatattcttgtggtaattcgaccaagcggatccaaatggaagcatgagtctggttctgtgaataatgagaaaag |
21093485 |
T |
|
| Q |
285 |
tccttcgtccattgggagagacgaaggagatctggcttcaaatcaatggtaccagccgaccaaattttttgtaagtcctctgccgactcaaaatgaaaat |
384 |
Q |
| |
|
|| || ||||||||||| |||||||||| ||||| | |||| || |||| |||||||||||| || |||||||||| |||||||||||||| || | |
|
|
| T |
21093484 |
tcttttagccattgggagaaacgaaggagacctggccttaaattgatagtactagccgaccaaatattccgtaagtcctcggccgactcaaaatg-aagt |
21093386 |
T |
|
| Q |
385 |
cgtaatagcccctgccaagcggtaccattt |
414 |
Q |
| |
|
| ||||| ||||| |||||||| ||||||| |
|
|
| T |
21093385 |
cataataaccccttccaagcggcaccattt |
21093356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 14679836 - 14679887
Alignment:
| Q |
186 |
atttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac |
237 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
14679836 |
atttccttcaatgtacgttcccgccaatactcttgcggtaactcaaccaaac |
14679887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 319 - 491
Target Start/End: Complemental strand, 11482906 - 11482726
Alignment:
| Q |
319 |
gcttcaaatcaatggtaccagccgaccaaattttttgtaagtcctctgccgactcaaaatgaaaatcgtaatagcccctgccaagcggtaccattttcca |
418 |
Q |
| |
|
|||||||||||| | |||||| |||||| ||||| |||||||||||||||||| || ||||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
11482906 |
gcttcaaatcaacgataccagttgaccaattttttcgtaagtcctctgccgactaaatatgaaaatcgtaatagccccttcaaagtagtaccattttcca |
11482807 |
T |
|
| Q |
419 |
tttgttca--------catacttttccaagcttagtaaccaaatcatgctccatttatggcttgtcgcccttattcaaggt |
491 |
Q |
| |
|
||| |||| ||||||||||| |||||||||||| ||| || | || |||||||||| ||||||||| ||||| |
|
|
| T |
11482806 |
tttattcatagtcttccatacttttccgagcttagtaaccgaattctgagctatgtatggcttgttgcccttatttaaggt |
11482726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 185 - 266
Target Start/End: Complemental strand, 11482983 - 11482902
Alignment:
| Q |
185 |
tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaacagatccagatagaagcgtgagtctgcttc |
266 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||| ||||||| || | | ||||||||||| |||||||||||| |
|
|
| T |
11482983 |
tatttccttcggtgtttgttcccaccaatattcttgcggtaattcaaccatacgggttcagatagaagcatgagtctgcttc |
11482902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 579 - 654
Target Start/End: Complemental strand, 14621986 - 14621911
Alignment:
| Q |
579 |
gaaacattatgattcatatatgttttagatctatttcatgtatcactgcgagtatgatggaaaaatattttttact |
654 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
14621986 |
gaaacattatgattcttatatgttttagatcaatttcatgtatcacaacgagtgggagggaaaaatattttttact |
14621911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 683 - 781
Target Start/End: Complemental strand, 9684748 - 9684650
Alignment:
| Q |
683 |
ttgatgagaggaacaaaacagatggggtctcaccttatctctttagcaccaactaaaggcatgtcccatgtccgacaaaaatacaacaccaacacatgt |
781 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||| ||||| || |||||| |||| |||| |||| ||||||||||||||||||||| |
|
|
| T |
9684748 |
ttgatgagaggaacaaaatagatggggtctcaccttatatctgatgcaccgaccaaaggcgtgtcttgtgtctgacacaaatacaacaccaacacatgt |
9684650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 17271772 - 17271738
Alignment:
| Q |
279 |
ttaaaatccttcgtccattgggagagacgaaggag |
313 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
17271772 |
ttaaaatccttcgtccattgggagaggcgaaggag |
17271738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 211 - 314
Target Start/End: Complemental strand, 19551550 - 19551447
Alignment:
| Q |
211 |
aatattcttgcggtaagtcaaccaaacagatccagatagaagcgtgagtctgcttctgtgaatactaattaaaatccttcgtccattgggagagacgaag |
310 |
Q |
| |
|
|||||||||| || || |||||||| | ||||| || ||||||||||| ||||||| |||||| | |||||| ||||||||| |||| ||||||||||| |
|
|
| T |
19551550 |
aatattcttggggcaattcaaccaagcgaatccaaatggaagcgtgagtttgcttctatgaataatgattaaagtccttcgtctattgtgagagacgaag |
19551451 |
T |
|
| Q |
311 |
gaga |
314 |
Q |
| |
|
|||| |
|
|
| T |
19551450 |
gaga |
19551447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 19552257 - 19552189
Alignment:
| Q |
67 |
tgaggaaaccttccctgtggaatttcatctgtaacattctgcaatgtcaagctgaaagagttggcagaa |
135 |
Q |
| |
|
||||| |||||||| || || ||||||||||||||||| ||||| | |||||||| |||||||||||| |
|
|
| T |
19552257 |
tgaggtaaccttccttgagggatttcatctgtaacattttgcaacgcaaagctgaacgagttggcagaa |
19552189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 278 - 313
Target Start/End: Original strand, 3009039 - 3009074
Alignment:
| Q |
278 |
attaaaatccttcgtccattgggagagacgaaggag |
313 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3009039 |
attaaaatccttcgtccattgggagaggcgaaggag |
3009074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 38137 - 38085
Alignment:
| Q |
185 |
tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac |
237 |
Q |
| |
|
|||||||||||||||| | ||||||||||| ||||||||||| || ||||||| |
|
|
| T |
38137 |
tatttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaac |
38085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 160642 - 160694
Alignment:
| Q |
185 |
tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac |
237 |
Q |
| |
|
|||||||||||||||| | ||||||||||| ||||||||||| || ||||||| |
|
|
| T |
160642 |
tatttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaac |
160694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 20381013 - 20380961
Alignment:
| Q |
185 |
tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac |
237 |
Q |
| |
|
|||||||||||||||| | ||||||||||| ||||||||||| || ||||||| |
|
|
| T |
20381013 |
tatttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaac |
20380961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 25976639 - 25976689
Alignment:
| Q |
185 |
tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaa |
235 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| ||||||||||| || ||||| |
|
|
| T |
25976639 |
tatttccttcaaggttcgttcccgccaatactcttgcggtaactccaccaa |
25976689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0567 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0567
Description:
Target: scaffold0567; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 278 - 313
Target Start/End: Complemental strand, 874 - 839
Alignment:
| Q |
278 |
attaaaatccttcgtccattgggagagacgaaggag |
313 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
874 |
attaaaatccttcgtccattgggagaggcgaaggag |
839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0490 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0490
Description:
Target: scaffold0490; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 12141 - 12090
Alignment:
| Q |
186 |
atttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac |
237 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
12141 |
atttccttcaatgtacgctcccgccaatactcttgcggtaactcaaccaaac |
12090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 31435 - 31486
Alignment:
| Q |
186 |
atttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac |
237 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||| |||||||||| |
|
|
| T |
31435 |
atttccttcaatgtacattcccgccaatactcttgcggtaactcaaccaaac |
31486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University