View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8020_low_20 (Length: 423)

Name: NF8020_low_20
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8020_low_20
NF8020_low_20
[»] chr6 (25 HSPs)
chr6 (1-402)||(29470447-29470848)
chr6 (25-402)||(29663983-29664360)
chr6 (203-402)||(28488885-28489084)
chr6 (203-402)||(29801295-29801494)
chr6 (232-402)||(29672465-29672635)
chr6 (231-396)||(29705015-29705180)
chr6 (203-399)||(29721285-29721481)
chr6 (170-401)||(29757158-29757389)
chr6 (233-401)||(29757299-29757467)
chr6 (167-385)||(29719466-29719684)
chr6 (170-402)||(29470757-29470989)
chr6 (167-280)||(29470895-29471008)
chr6 (236-386)||(28488617-28488767)
chr6 (236-386)||(29801029-29801179)
chr6 (163-276)||(28488586-28488699)
chr6 (163-276)||(29800998-29801111)
chr6 (272-399)||(29672045-29672172)
chr6 (231-396)||(29719596-29719761)
chr6 (231-280)||(29756715-29756764)
chr6 (356-396)||(28488748-28488788)
chr6 (314-402)||(29672183-29672271)
chr6 (356-396)||(29801160-29801200)
chr6 (272-399)||(29719734-29719861)
chr6 (21-99)||(2187098-2187176)
chr6 (233-333)||(29690409-29690509)
[»] chr1 (9 HSPs)
chr1 (30-402)||(5920967-5921339)
chr1 (231-402)||(5920121-5920292)
chr1 (167-402)||(5919980-5920215)
chr1 (236-402)||(5919557-5919723)
chr1 (175-281)||(5920665-5920771)
chr1 (311-400)||(5919418-5919507)
chr1 (157-262)||(5919838-5919943)
chr1 (314-402)||(5919698-5919786)
chr1 (332-396)||(5920409-5920473)
[»] scaffold0007 (3 HSPs)
scaffold0007 (232-402)||(73945-74115)
scaffold0007 (156-264)||(74010-74118)
scaffold0007 (231-280)||(74221-74270)
[»] chr3 (6 HSPs)
chr3 (203-399)||(616576-616772)
chr3 (239-396)||(617458-617615)
chr3 (167-402)||(617668-617903)
chr3 (134-396)||(616648-616910)
chr3 (167-280)||(617809-617922)
chr3 (311-399)||(617248-617336)
[»] scaffold0012 (5 HSPs)
scaffold0012 (232-397)||(210445-210610)
scaffold0012 (231-402)||(237024-237195)
scaffold0012 (231-399)||(236886-237054)
scaffold0012 (342-399)||(200067-200124)
scaffold0012 (314-402)||(236742-236830)
[»] chr8 (2 HSPs)
chr8 (271-402)||(12591331-12591462)
chr8 (35-147)||(12591236-12591348)


Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 29470447 - 29470848
Alignment:
Q  1 tttaagttttgatcaccacaaatctttaacacggatacctgacatatctggtcttgtaaatttagaagaactttcttttcaagattgtgtgaatttaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29470447 tttaagttttgatcaccacaaatctttaacacggatacctgacatatctggtctcgtaaatttagaagaactttcttttcaagattgtgtgaatttaatc 29470546  T
Q  101 acagtcgatgactccgttgggtttctgggtaatcttaaaaccttgagagctatgcgttgcatcaaactcaggagtattccgcccctcaagttggcttcta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||     
T  29470547 acagtcgatgactccgttgggtttctgggtaatcttaaaaccttaagagctatgcgttgcatcaagctcaggagtattccgcctctcaagttggcttctc 29470646  T
Q  201 tggaagaactcgatctttcacagtgttcttgtcttgagagttttccacctgtggtagatgggttggtggataaacttaaaaccatgactgttagaagttg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29470647 tggaagaactcgatctttcacagtgttcttgtcttgagagttttccacctgtggtagatgggttggtggataaacttaaaaccatgactgttagaagttg 29470746  T
Q  301 catcaagctaaggagtattccaactcttaagttgacttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggtggat 400  Q
    | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29470747 cgtcaagttaaggagtattccaactcttaagttgacttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggtggat 29470846  T
Q  401 gg 402  Q
    ||    
T  29470847 gg 29470848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 25 - 402
Target Start/End: Complemental strand, 29664360 - 29663983
Alignment:
Q  25 tttaacacggatacctgacatatctggtcttgtaaatttagaagaactttcttttcaagattgtgtgaatttaatcacagtcgatgactccgttgggttt 124  Q
    |||||||| |||||||||| |||||||||| ||||||||||||||| |||| ||||||| |||||||||||||||||||||| |||||||| |||||||     
T  29664360 tttaacacagatacctgacgtatctggtctcgtaaatttagaagaattttcctttcaaggttgtgtgaatttaatcacagtccatgactccattgggttg 29664261  T
Q  125 ctgggtaatcttaaaaccttgagagctatgcgttgcatcaaactcaggagtattccgcccctcaagttggcttctatggaagaactcgatctttcacagt 224  Q
    || ||||  ||||||||||| |||| |||| |||||||||| |||||||||||||| || ||||| ||||||||| | |||||||| ||||||||| |||    
T  29664260 ctaggtagacttaaaaccttaagagttatgtgttgcatcaagctcaggagtattccacctctcaacttggcttctctagaagaacttgatctttcagagt 29664161  T
Q  225 gttcttgtcttgagagttttccacctgtggtagatgggttggtggataaacttaaaaccatgactgttagaagttgcatcaagctaaggagtattccaac 324  Q
    |||| |||||||||||||||||||| ||||| |||||||||| ||||||||||||||| |||| ||||||||| ||| | || ||||||||||||||| |    
T  29664160 gttcatgtcttgagagttttccaccagtggtggatgggttggcggataaacttaaaacaatgagtgttagaagatgcttaaatctaaggagtattccacc 29664061  T
Q  325 tcttaagttgacttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggtggatgg 402  Q
    ||||||||||||||| |||||| || ||||||||||  | |||||||||||||||| ||||||||||||| |||||||    
T  29664060 tcttaagttgacttctttagaaaaattcgatctttcgcaatgttttagtctcgagaattttccacttgtgttggatgg 29663983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 203 - 402
Target Start/End: Complemental strand, 28489084 - 28488885
Alignment:
Q  203 gaagaactcgatctttcacagtgttcttgtcttgagagttttccacctgtggtagatgggttggtggataaacttaaaaccatgactgttagaagttgca 302  Q
    |||||||| ||||||||| | ||| || |||||||||||||||||||| ||||||||||||| |  ||||| ||||||||||||| ||||||| ||||||    
T  28489084 gaagaacttgatctttcagattgtactggtcttgagagttttccacctttggtagatgggtttggtgataagcttaaaaccatgagtgttagaggttgca 28488985  T
Q  303 tcaagctaaggagtattccaactcttaagttgacttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggtggatgg 402  Q
    ||||  ||||||||||||||||||| | |||  ||||  |||||||||| ||||||||| ||||| ||||||| |||||||||||| | |||| ||||||    
T  28488984 tcaatataaggagtattccaactctcatgttagcttctctagaagaacttgatctttcagattgtattagtcttgagagttttccaatagtggaggatgg 28488885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 203 - 402
Target Start/End: Complemental strand, 29801494 - 29801295
Alignment:
Q  203 gaagaactcgatctttcacagtgttcttgtcttgagagttttccacctgtggtagatgggttggtggataaacttaaaaccatgactgttagaagttgca 302  Q
    |||||||| ||||||||| | ||| || |||||||||||||||||||| ||||||||||||| |  ||||| ||||||||||||| ||||||| ||||||    
T  29801494 gaagaacttgatctttcagattgtactggtcttgagagttttccacctttggtagatgggtttggtgataagcttaaaaccatgagtgttagaggttgca 29801395  T
Q  303 tcaagctaaggagtattccaactcttaagttgacttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggtggatgg 402  Q
    ||||  ||||||||||||||||||| | |||  ||||  |||||||||| ||||||||| ||||| ||||||| |||||||||||| | |||| ||||||    
T  29801394 tcaatataaggagtattccaactctcatgttagcttctctagaagaacttgatctttcagattgtattagtcttgagagttttccaatagtggaggatgg 29801295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 232 - 402
Target Start/End: Complemental strand, 29672635 - 29672465
Alignment:
Q  232 tcttgagagttttccacctgtggtagatgggttggtggataaacttaaaaccatgactgttagaagttgcatcaagctaaggagtattccaactcttaag 331  Q
    ||||||||||||| | | ||||||||||||||| |  ||||| |||| |||||||| ||||||| | ||| ||||||||| |||||||||| ||||||||    
T  29672635 tcttgagagtttttcgcatgtggtagatgggtttggtgataagcttagaaccatgagtgttagaggatgcttcaagctaaagagtattccacctcttaag 29672536  T
Q  332 ttgacttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggtggatgg 402  Q
    |||  |||  |||||  | | || ||||||  ||||||| |||||||||||||||||||||||||||||||    
T  29672535 ttggattcactagaaacaatggacctttcatgttgttttcgtctcgagagttttccacttgtggtggatgg 29672465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 231 - 396
Target Start/End: Complemental strand, 29705180 - 29705015
Alignment:
Q  231 gtcttgagagttttccacctgtggtagatgggttggtggataaacttaaaaccatgactgttagaagttgcatcaagctaaggagtattccaactcttaa 330  Q
    ||||||||||||||| ||||| |||||||||||| |  ||||| ||||||||||||| ||||||| |||| | ||| ||||||||||||||  |||| ||    
T  29705180 gtcttgagagttttcaacctggggtagatgggtttggtgataagcttaaaaccatgaatgttagaggttgtaccaatctaaggagtattccccctctcaa 29705081  T
Q  331 gttgacttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggt 396  Q
    ||||  |||  |||||  ||| || ||||||  ||||| |||||| ||||||||||||||||||||    
T  29705080 gttggattcactagaaacacttgaactttcatgttgttatagtcttgagagttttccacttgtggt 29705015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 203 - 399
Target Start/End: Complemental strand, 29721481 - 29721285
Alignment:
Q  203 gaagaactcgatctttcacagtgttcttgtcttgagagttttccacctgtggtagatgggttggtggataaacttaaaaccatgactgttagaagttgca 302  Q
    ||||||||| |||||||| |||||  |  |||||||| |||| |||||||| ||||||  || |  ||||| |||||||  |||| |||||||  |||||    
T  29721481 gaagaactctatctttcagagtgtagtaatcttgagaatttttcacctgtgatagatgactttggtgataagcttaaaataatgagtgttagacattgca 29721382  T
Q  303 tcaagctaaggagtattccaactcttaagttgacttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggtgga 399  Q
    |||||||||||||||||||| |||| ||||||  |||  |||||  |||  | ||||||  ||||  |||||| |||||||||||||||||||||||    
T  29721381 tcaagctaaggagtattccacctctcaagttggattcactagaaacactaaaactttcattttgtcatagtcttgagagttttccacttgtggtgga 29721285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 170 - 401
Target Start/End: Complemental strand, 29757389 - 29757158
Alignment:
Q  170 aggagtattccgcccctcaagttggcttctatggaagaactcgatctttcacagtgttcttgtcttgagagttttccacctgtggtagatgggttggtgg 269  Q
    ||||||||||| || |||||||||  |||| | |||  ||| || ||||| ||||||| | ||||||||| |||||||| ||||||||||| |||  | |    
T  29757389 aggagtattccacctctcaagttgaattctctagaaacacttgacctttcgcagtgttatagtcttgagaattttccacttgtggtagatgcgtttcttg 29757290  T
Q  270 ataaacttaaaaccatgactgttagaagttgcatcaagctaaggagtattccaactcttaagttgacttcgttagaagaactcgatctttcaaattgttt 369  Q
      |||||||||||| ||| ||||| | |||||  ||| |||| |||||||||| |||| ||||||| |||  |||||  ||| || |||||  | ||||     
T  29757289 gaaaacttaaaaccttgaatgttaaaggttgctgcaaactaacgagtattccacctctcaagttgaattctctagaaacacttgacctttcgcaatgtta 29757190  T
Q  370 tagtctcgagagttttccacttgtggtggatg 401  Q
    |||||| |||| ||| ||||||||||||||||    
T  29757189 tagtcttgagaatttcccacttgtggtggatg 29757158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 401
Target Start/End: Complemental strand, 29757467 - 29757299
Alignment:
Q  233 cttgagagttttccacctgtggtagatgggttggtggataaacttaaaaccatgactgttagaagttgcatcaagctaaggagtattccaactcttaagt 332  Q
    ||||||||||||||||||||| ||||||| || |  ||||| || |||||||||| ||||| |  |||||  | |||||||||||||||| |||| ||||    
T  29757467 cttgagagttttccacctgtgttagatggatttggtgataagctaaaaaccatgaatgttatatattgcaaaatgctaaggagtattccacctctcaagt 29757368  T
Q  333 tgacttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggtggatg 401  Q
    ||| |||  |||||  ||| || |||||  | |||| |||||| |||| ||||||||||||||| ||||    
T  29757367 tgaattctctagaaacacttgacctttcgcagtgttatagtcttgagaattttccacttgtggtagatg 29757299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 167 - 385
Target Start/End: Complemental strand, 29719684 - 29719466
Alignment:
Q  167 ctcaggagtattccgcccctcaagttggcttctatggaagaactcgatctttcacagtgttcttgtcttgagagttttccacctgtggtagatgggttgg 266  Q
    |||||||||||||| || |||||||||| |||  | |||  ||| |||||||||   |||| | ||||||||| |||||||| |||||| || |||||      
T  29719684 ctcaggagtattccacctctcaagttggattcactagaaacacttgatctttcatgttgttttagtcttgagaattttccacttgtggttgacgggtttc 29719585  T
Q  267 tggataaacttaaaaccatgactgttagaagttgcatcaagctaaggagtattccaactcttaagttgacttcgttagaagaactcgatctttcaaattg 366  Q
    | |  |||||||||||||||  ||||| || |||   ||| || || ||||||||| |||||||||||  || | || ||||||| || |||||||||||    
T  29719584 ttggaaaacttaaaaccatgcttgttaaaaattgtcacaatctcagaagtattccacctcttaagttggatttgctacaagaacttgacctttcaaattg 29719485  T
Q  367 ttttagtctcgagagtttt 385  Q
    |||||  ||||||||||||    
T  29719484 ttttatgctcgagagtttt 29719466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 170 - 402
Target Start/End: Original strand, 29470757 - 29470989
Alignment:
Q  170 aggagtattccgcccctcaagttggcttctatggaagaactcgatctttcacagtgttcttgtcttgagagttttccacctgtggtagatgggttggtgg 269  Q
    |||||||||||  | || |||||| ||||  | |||||||||||||||||| | |||| | |||| ||||||||||||| |||||| ||||||||  | |    
T  29470757 aggagtattccaactcttaagttgacttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggtggatgggtttcttg 29470856  T
Q  270 ataaacttaaaaccatgactgttagaagttgcatcaagctaaggagtattccaactcttaagttgacttcgttagaagaactcgatctttcaaattgttt 369  Q
      |||||||||| | |   ||||| |  |||   ||| || |||||||||||| |||| | ||||  ||| |||||| | || || |||||| ||||||     
T  29470857 gaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctctcaggttggattcattagaaaagcttgacctttcacattgtta 29470956  T
Q  370 tagtctcgagagttttccacttgtggtggatgg 402  Q
    |||||||||||||||||||  ||||||||||||    
T  29470957 tagtctcgagagttttccaactgtggtggatgg 29470989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 280
Target Start/End: Original strand, 29470895 - 29471008
Alignment:
Q  167 ctcaggagtattccgcccctcaagttggcttctatggaagaactcgatctttcacagtgttcttgtcttgagagttttccacctgtggtagatgggttgg 266  Q
    |||||||||||||| || |||| ||||| |||  | ||| | || || |||||||| |||| | |||| |||||||||||| ||||||| |||||||||     
T  29470895 ctcaggagtattccacctctcaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaactgtggtggatgggttgt 29470994  T
Q  267 tggataaacttaaa 280  Q
    ||||||||||||||    
T  29470995 tggataaacttaaa 29471008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 386
Target Start/End: Complemental strand, 28488767 - 28488617
Alignment:
Q  236 gagagttttccacctgtggtagatgggttggtggataaacttaaaaccatgactgttagaagttgcatcaagctaaggagtattccaactcttaagttga 335  Q
    ||||||||||||| ||||||||| |||||  | |  |||||||||||| |   |||| |||||||   ||| || |||||||||||| |||| ||||||     
T  28488767 gagagttttccacttgtggtagacgggtttcttggaaaacttaaaacccttcttgttggaagttgtcacaaactcaggagtattccacctctcaagttgg 28488668  T
Q  336 cttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttc 386  Q
     |||  ||||| |||| || |||||| |||||| |||||||||||||||||    
T  28488667 attcactagaaaaacttgacctttcatattgttgtagtctcgagagttttc 28488617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 386
Target Start/End: Complemental strand, 29801179 - 29801029
Alignment:
Q  236 gagagttttccacctgtggtagatgggttggtggataaacttaaaaccatgactgttagaagttgcatcaagctaaggagtattccaactcttaagttga 335  Q
    ||||||||||||| ||||||||| |||||  | |  |||||||||||| |   |||| |||||||   ||| || |||||||||||| |||| ||||||     
T  29801179 gagagttttccacttgtggtagacgggtttcttggaaaacttaaaacccttcttgttggaagttgtcacaaactcaggagtattccacctctcaagttgg 29801080  T
Q  336 cttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttc 386  Q
     |||  ||||| |||| || |||||| |||||| |||||||||||||||||    
T  29801079 attcactagaaaaacttgacctttcatattgttgtagtctcgagagttttc 29801029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 276
Target Start/End: Complemental strand, 28488699 - 28488586
Alignment:
Q  163 caaactcaggagtattccgcccctcaagttggcttctatggaagaactcgatctttcacagtgttcttgtcttgagagttttccacctgtggtagatggg 262  Q
    |||||||||||||||||| || |||||||||| |||  | ||| |||| || |||||| | |||| | |||| |||||||||| | ||||||  ||||||    
T  28488699 caaactcaggagtattccacctctcaagttggattcactagaaaaacttgacctttcatattgttgtagtctcgagagttttctatctgtggaggatggg 28488600  T
Q  263 ttggtggataaact 276  Q
    ||| ||||||||||    
T  28488599 ttgctggataaact 28488586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 276
Target Start/End: Complemental strand, 29801111 - 29800998
Alignment:
Q  163 caaactcaggagtattccgcccctcaagttggcttctatggaagaactcgatctttcacagtgttcttgtcttgagagttttccacctgtggtagatggg 262  Q
    |||||||||||||||||| || |||||||||| |||  | ||| |||| || |||||| | |||| | |||| |||||||||| | ||||||  ||||||    
T  29801111 caaactcaggagtattccacctctcaagttggattcactagaaaaacttgacctttcatattgttgtagtctcgagagttttctatctgtggaggatggg 29801012  T
Q  263 ttggtggataaact 276  Q
    ||| ||||||||||    
T  29801011 ttgctggataaact 29800998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 399
Target Start/End: Complemental strand, 29672172 - 29672045
Alignment:
Q  272 aaacttaaaaccatgactgttagaagttgcatcaagctaaggagtattccaactcttaagttgacttcgttagaagaactcgatctttcaaattgtttta 371  Q
    |||||||||||| ||| || || ||||||   |||  |||||||||||||| |||| ||||||  ||   |||||  ||| || |||||||||||| |||    
T  29672172 aaacttaaaaccctgagtgctaaaagttgtcgcaatttaaggagtattccatctctcaagttggatttactagaaacacttgacctttcaaattgtgtta 29672073  T
Q  372 gtctcgagagttttccacttgtggtgga 399  Q
    |||| |||||| ||||||||||||||||    
T  29672072 gtcttgagagtcttccacttgtggtgga 29672045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 396
Target Start/End: Complemental strand, 29719761 - 29719596
Alignment:
Q  231 gtcttgagagttttccacctgtggtagatgggt-tggtggataaacttaaaaccatgactgttagaagttgcatcaagctaaggagtattccaactctta 329  Q
    |||||||||||||||||| |||||| || | || |  |||| |||||||||||||||  ||||| ||  ||  |||  || |||||||||||| |||| |    
T  29719761 gtcttgagagttttccacttgtggtggacgagtatcttgga-aaacttaaaaccatgcttgttacaaactgtttcagtctcaggagtattccacctctca 29719663  T
Q  330 agttgacttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggt 396  Q
    |||||  |||  |||||  ||| |||||||||  |||||||||||| |||| |||||||||||||||    
T  29719662 agttggattcactagaaacacttgatctttcatgttgttttagtcttgagaattttccacttgtggt 29719596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 280
Target Start/End: Complemental strand, 29756764 - 29756715
Alignment:
Q  231 gtcttgagagttttccacctgtggtagatgggttggtggataaacttaaa 280  Q
    |||||||||||||||||  |||||| ||||||||| ||||||||||||||    
T  29756764 gtcttgagagttttccatgtgtggtggatgggttgttggataaacttaaa 29756715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 396
Target Start/End: Complemental strand, 28488788 - 28488748
Alignment:
Q  356 ctttcaaattgttttagtctcgagagttttccacttgtggt 396  Q
    ||||||||||||| || ||||||||||||||||||||||||    
T  28488788 ctttcaaattgttataatctcgagagttttccacttgtggt 28488748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 402
Target Start/End: Complemental strand, 29672271 - 29672183
Alignment:
Q  314 agtattccaactcttaagttgacttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggtggatgg 402  Q
    |||||||||||||| | ||| | || | ||||||| || ||||||||  ||||| ||| |||||||| |||||||||||| ||||||||    
T  29672271 agtattccaactctcatgttaagtttgctagaagagctagatctttcgtattgtcttaatctcgagaattttccacttgtagtggatgg 29672183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 396
Target Start/End: Complemental strand, 29801200 - 29801160
Alignment:
Q  356 ctttcaaattgttttagtctcgagagttttccacttgtggt 396  Q
    ||||||||||||| || ||||||||||||||||||||||||    
T  29801200 ctttcaaattgttataatctcgagagttttccacttgtggt 29801160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 272 - 399
Target Start/End: Complemental strand, 29719861 - 29719734
Alignment:
Q  272 aaacttaaaaccatgactgttagaagttgcatcaagctaaggagtattccaactcttaagttgacttcgttagaagaactcgatctttcaaattgtttta 371  Q
    |||||||||||| ||| ||||| | ||||   ||| || || ||||||||| |||||||||||  |||  | |||  ||| || |||||| |||||  ||    
T  29719861 aaacttaaaaccctgaatgttaaatgttgtcgcaatctcagaagtattccacctcttaagttggattcactggaaacactagaactttcagattgtcata 29719762  T
Q  372 gtctcgagagttttccacttgtggtgga 399  Q
    |||| |||||||||||||||||||||||    
T  29719761 gtcttgagagttttccacttgtggtgga 29719734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 2187098 - 2187176
Alignment:
Q  21 aatctttaacacggatacctgacatatctggtcttgtaaatttagaagaactttcttttcaagattgtgtgaatttaat 99  Q
    |||||||||||| ||||| |||||||||||||||  ||||||| |||  ||| || |||| |||||||  |||||||||    
T  2187098 aatctttaacacagatacttgacatatctggtctcttaaatttggaaatactgtcatttcgagattgttcgaatttaat 2187176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 333
Target Start/End: Complemental strand, 29690509 - 29690409
Alignment:
Q  233 cttgagagttttccacctgtggtagatgggttggtggataaacttaaaaccatgactgttagaagttgcatcaagctaaggagtattccaactcttaagt 332  Q
    |||||||| ||||||   ||||| ||||||||| ||||||||||||||||| ||  ||||| || |||   ||| || |||||||||||| |||| ||||    
T  29690509 cttgagagctttccaggcgtggtggatgggttgttggataaacttaaaaccttgtttgttaaaaattgtcacaatcttaggagtattccagctctcaagt 29690410  T
Q  333 t 333  Q
    |    
T  29690409 t 29690409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 30 - 402
Target Start/End: Complemental strand, 5921339 - 5920967
Alignment:
Q  30 cacggatacctgacatatctggtcttgtaaatttagaagaactttcttttcaagattgtgtgaatttaatcacagtcgatgactccgttgggtttctggg 129  Q
    ||||||| || ||||||||||||||  ||||||||||||||||||| |||||| |||||| ||| ||||| ||| | |||||||| ||||||||  | |     
T  5921339 cacggatgcccgacatatctggtctcctaaatttagaagaactttcatttcaatattgtgagaacttaattacaatggatgactcggttgggttgttagc 5921240  T
Q  130 taatcttaaaaccttgagagctatgcgttgcatcaaactcaggagtattccgcccctcaagttggcttctatggaagaactcgatctttcacagtgttct 229  Q
    ||| ||||||| |||||||| |    ||||||  || |||| |||| |||| || |||||||||| |||  | |||||||||||||||||| |   |  |    
T  5921239 taaacttaaaatcttgagagttggaagttgcaagaagctcaagagtcttccacctctcaagttggtttcgctagaagaactcgatctttcatatattgat 5921140  T
Q  230 tgtcttgagagttttccacctgtggtagatgggttggtggataaacttaaaaccatgactgttagaagttgcatcaagctaaggagtattccaactctta 329  Q
     |||| ||||||||||||| |||||||||||||||  |  |||||||| ||||| ||| ||||| || ||||| ||   | |||||||||||| ||||||    
T  5921139 agtctcgagagttttccacatgtggtagatgggtttcttaataaacttcaaaccttgagtgttaaaaattgcaacactattaggagtattccacctctta 5921040  T
Q  330 agttgacttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggtggatgg 402  Q
    || || ||||  | ||||||||  |||||| | |||||  |||||||||| ||||||||||||||||||||||    
T  5921039 agatggcttcacttgaagaacttaatcttttatattgtgatagtctcgagtgttttccacttgtggtggatgg 5920967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 231 - 402
Target Start/End: Complemental strand, 5920292 - 5920121
Alignment:
Q  231 gtcttgagagttttccacctgtggtagatgggttggtggataaacttaaaaccatgactgttagaagttgcatcaagctaaggagtattccaactcttaa 330  Q
    ||||||| |||||||| | |||||| |||||| || |||| ||||||||||  ||||  |||| |||||| | ||| || | |||||| ||| |||| ||    
T  5920292 gtcttgatagttttccccatgtggtggatgggatgttggagaaacttaaaattatgagagttaaaagttgtagcaatctcaagagtatcccacctctaaa 5920193  T
Q  331 gttgacttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggtggatgg 402  Q
    |||| ||||  | |||||||| ||||||||| |||||  |||||||||||||||||||   |||||||||||    
T  5920192 gttggcttcactggaagaacttgatctttcatattgtgatagtctcgagagttttccaacagtggtggatgg 5920121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 402
Target Start/End: Complemental strand, 5920215 - 5919980
Alignment:
Q  167 ctcaggagtattccgcccctcaagttggcttctatggaagaactcgatctttcacagtgttcttgtcttgagagttttccacctgtggtagatgggttgg 266  Q
    |||| |||||| || || || |||||||||||  |||||||||| ||||||||| | |||  | |||| |||||||||||| | ||||| ||||| ||      
T  5920215 ctcaagagtatcccacctctaaagttggcttcactggaagaacttgatctttcatattgtgatagtctcgagagttttccaacagtggtggatggatttt 5920116  T
Q  267 tggataaacttaaaaccatgactgttagaagttgcatcaagctaaggagtattccaactcttaagttgacttcgttagaagaactcgatctttcaaattg 366  Q
    ||| |||||||| |    |||  || | | |||||| ||| || |  ||| ||||| |||| |||||| |||| ||||||| ||| ||||||||| ||||    
T  5920115 tgggtaaacttagagtattgagcgtcaaaggttgcaacaaactcaaaagttttccacctctcaagttggcttctttagaagtacttgatctttcatattg 5920016  T
Q  367 ttttagtctcgagagttttccacttgtggtggatgg 402  Q
    |  || ||||||||||||||| ||| ||||||||||    
T  5920015 tgataatctcgagagttttcctcttttggtggatgg 5919980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 402
Target Start/End: Complemental strand, 5919723 - 5919557
Alignment:
Q  236 gagagttttccacctgtggtagatgggttggtggataaacttaaaaccatgactgttagaagttgcatcaagctaaggagtattccaactcttaagttga 335  Q
    ||||||||||||| |||||||||||||||| ||| |||||||||   | | | |||||||  ||||  |||||| | |||||||||| |||| || ||      
T  5919723 gagagttttccacatgtggtagatgggttgctgggtaaacttaaggtccttaatgttagatattgccacaagctcaagagtattccacctctcaaattag 5919624  T
Q  336 cttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggtggatgg 402  Q
     |||| | ||| |||||||||||||  |||||  ||||||| |||||||||||| | | ||||||||    
T  5919623 attcgctggaacaactcgatctttcttattgtgatagtctcaagagttttccacctattgtggatgg 5919557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 281
Target Start/End: Complemental strand, 5920771 - 5920665
Alignment:
Q  175 tattccgcccctcaagttggcttctatggaagaactcgatctttcacagtgttcttgtcttgagagttttccacctgtggtagatgggttggtggataaa 274  Q
    |||||| || |||||||||| | || ||||| |||||||||||||| | ||   | | ||||||||||||||||| ||||| ||||||||| ||| ||||    
T  5920771 tattccacctctcaagttgggtgctttggaacaactcgatctttcatattgcaatagccttgagagttttccacccgtggtggatgggttgttgggtaaa 5920672  T
Q  275 cttaaaa 281  Q
    |||||||    
T  5920671 cttaaaa 5920665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 400
Target Start/End: Complemental strand, 5919507 - 5919418
Alignment:
Q  311 aggagtattccaactcttaagttgacttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggtggat 400  Q
    |||||||| ||  |||| || ||| ||||| ||||||||||| |||||||| |||||  || ||| ||| ||||||||||||||||||||    
T  5919507 aggagtatcccgcctctcaatttggcttcgctagaagaactcaatctttcatattgtcataatcttgagtgttttccacttgtggtggat 5919418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 262
Target Start/End: Complemental strand, 5919943 - 5919838
Alignment:
Q  157 ttgcatcaaactcaggagtattccgcccctcaagttggcttctatggaagaactcgatctttcacagtgttcttgtcttgagagttttccacctgtggta 256  Q
    ||||| ||| |||||||| ||||| || |||||||||||||   ||||| |  | ||||||||| | |||  | |||||| ||||||||||||||||||     
T  5919943 ttgcagcaagctcaggagcattccacctctcaagttggctttactggaacattttgatctttcatattgtgatagtcttgtgagttttccacctgtggtg 5919844  T
Q  257 gatggg 262  Q
    ||||||    
T  5919843 gatggg 5919838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 402
Target Start/End: Complemental strand, 5919786 - 5919698
Alignment:
Q  314 agtattccaactcttaagttgacttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggtggatgg 402  Q
    ||||| ||| |||| |||||||||||  ||||||||||  ||||| || |||||  | | |||||||||||||||| |||||| |||||    
T  5919786 agtatcccacctctcaagttgacttccctagaagaacttaatcttacatattgtgatggcctcgagagttttccacatgtggtagatgg 5919698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 396
Target Start/End: Complemental strand, 5920473 - 5920409
Alignment:
Q  332 ttgacttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggt 396  Q
    ||||||||  |||||||||| |||||||||||||||   ||||| ||||||||||| | ||||||    
T  5920473 ttgacttctctagaagaactagatctttcaaattgtcagagtcttgagagttttccgcctgtggt 5920409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 79; Significance: 9e-37; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 232 - 402
Target Start/End: Original strand, 73945 - 74115
Alignment:
Q  232 tcttgagagttttccacctgtggtagatgggttggtggataaacttaaaaccatgactgttagaagttgcatcaagctaaggagtattccaactcttaag 331  Q
    ||||||||||||| ||||| ||||||||| ||| |  ||||| ||||||| ||||| ||||| | |||| ||||||||||||||||||||| |||| | |    
T  73945 tcttgagagtttttcacctatggtagatgagtttggtgataagcttaaaatcatgagtgttaaaggttgaatcaagctaaggagtattccacctctcatg 74044  T
Q  332 ttgacttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggtggatgg 402  Q
    ||  ||||  |||||||||||||||||||||||||| || |||| |||||||||||||| |||||||||||    
T  74045 ttagcttctctagaagaactcgatctttcaaattgtattggtcttgagagttttccactcgtggtggatgg 74115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 264
Target Start/End: Original strand, 74010 - 74118
Alignment:
Q  156 gttgcatcaaactcaggagtattccgcccctcaagttggcttctatggaagaactcgatctttcacagtgttcttgtcttgagagttttccacctgtggt 255  Q
    |||| ||||| || ||||||||||| || |||| ||| |||||| | |||||||||||||||||| | |||  | ||||||||||||||||||  |||||    
T  74010 gttgaatcaagctaaggagtattccacctctcatgttagcttctctagaagaactcgatctttcaaattgtattggtcttgagagttttccactcgtggt 74109  T
Q  256 agatgggtt 264  Q
     ||||||||    
T  74110 ggatgggtt 74118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 280
Target Start/End: Original strand, 74221 - 74270
Alignment:
Q  231 gtcttgagagttttccacctgtggtagatgggttggtggataaacttaaa 280  Q
    ||||||||| |||||||  |||||||||||||||| ||||||||||||||    
T  74221 gtcttgagaattttccatgtgtggtagatgggttgttggataaacttaaa 74270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 203 - 399
Target Start/End: Original strand, 616576 - 616772
Alignment:
Q  203 gaagaactcgatctttcacagtgttcttgtcttgagagttttccacctgtggtagatgggttggtggataaacttaaaaccatgactgttagaagttgca 302  Q
    |||||||||||||||||| | ||| ||  |||||||| ||||  |||||||| ||||||||| |  ||||| ||||||||||||| ||||||| ||||||    
T  616576 gaagaactcgatctttcagattgtactaatcttgagaattttttacctgtggaagatgggtttggtgataagcttaaaaccatgagtgttagacgttgca 616675  T
Q  303 tcaagctaaggagtattccaactcttaagttgacttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggtgga 399  Q
    |||||||||||||||||||| |||| ||||||  || | |||||  |||  | ||||||  ||||| |||||| |||||||||||||||||| ||||    
T  616676 tcaagctaaggagtattccacctctcaagttggatttgctagaaacacttaacctttcatgttgttatagtcttgagagttttccacttgtgatgga 616772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 239 - 396
Target Start/End: Original strand, 617458 - 617615
Alignment:
Q  239 agttttccacctgtggtagatgggttggtggataaacttaaaaccatgactgttagaagttgcatcaagctaaggagtattccaactcttaagttgactt 338  Q
    |||||||||| |||||| || |||||  | |  |||||||||||| ||  ||||| ||||||   ||| || |||||||||||| |||| ||||||  ||    
T  617458 agttttccacttgtggtggacgggtttcttggaaaacttaaaaccctgcgtgttacaagttgtcacaatctcaggagtattccacctctcaagttggatt 617557  T
Q  339 cgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggt 396  Q
     | |||||||||| || ||||||||||||| ||| ||||||| |||||||||||||||    
T  617558 tgctagaagaacttgacctttcaaattgttataggctcgagaattttccacttgtggt 617615  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 402
Target Start/End: Original strand, 617668 - 617903
Alignment:
Q  167 ctcaggagtattccgcccctcaagttggcttctatggaagaactcgatctttcacagtgttcttgtcttgagagttttccacctgtggtagatgggttgg 266  Q
    |||||||||||||| || ||| |||||| |||  | ||| |||| || |||||| | |||| | | || ||||||||||||| |||||| ||||||||      
T  617668 ctcaggagtattccacctctccagttggattcacttgaaaaacttgacctttcaaattgttataggctcgagagttttccacttgtggtggatgggtttc 617767  T
Q  267 tggataaacttaaaaccatgactgttagaagttgcatcaagctaaggagtattccaactcttaagttgacttcgttagaagaactcgatctttcaaattg 366  Q
    | |  |||||||||||| |   ||||| ||||||   ||| || |||||||| ||| |||| || |||  ||| |||||| |||| || ||||||  |||    
T  617768 ttggaaaacttaaaaccctacttgttacaagttgtcacaatctcaggagtatcccacctctcaatttggattctttagaaaaacttgacctttcatgttg 617867  T
Q  367 ttttagtctcgagagttttccacttgtggtggatgg 402  Q
    || |||||| |||||||||||| | |||||||||||    
T  617868 ttgtagtcttgagagttttccattggtggtggatgg 617903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 396
Target Start/End: Original strand, 616648 - 616910
Alignment:
Q  134 cttaaaaccttgagagctatgcgttgcatcaaactcaggagtattccgcccctcaagttggcttctatggaagaactcgatctttcacagtgttcttgtc 233  Q
    ||||||||| |||| | ||  ||||||||||| || ||||||||||| || |||||||||| ||   | |||  |||  | ||||||   |||| | |||    
T  616648 cttaaaaccatgagtgttagacgttgcatcaagctaaggagtattccacctctcaagttggatttgctagaaacacttaacctttcatgttgttatagtc 616747  T
Q  234 ttgagagttttccacctgtggtagatgggttggtggataaacttaaaaccatgactgttagaagttgcatcaagctaaggagtattccaactcttaagtt 333  Q
    ||||||||||||||| |||| | || |||||  | |  |||||||||||  |   |||||  ||||||||||||||||||||||||||| |||| |||||    
T  616748 ttgagagttttccacttgtgatggacgggtttcttggaaaacttaaaactctacttgttaatagttgcatcaagctaaggagtattccacctctcaagtt 616847  T
Q  334 gacttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggt 396  Q
    |  || | ||||| |||| || |||||| |||||  |   || ||| ||||||||||||||||    
T  616848 ggatttgctagaaaaacttgacctttcatattgtggtgcccttgagtgttttccacttgtggt 616910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 280
Target Start/End: Original strand, 617809 - 617922
Alignment:
Q  167 ctcaggagtattccgcccctcaagttggcttctatggaagaactcgatctttcacagtgttcttgtcttgagagttttccacctgtggtagatgggttgg 266  Q
    ||||||||||| || || ||||| |||| |||| | ||| |||| || ||||||   |||| | |||||||||||||||||   ||||| |||||||||     
T  617809 ctcaggagtatcccacctctcaatttggattctttagaaaaacttgacctttcatgttgttgtagtcttgagagttttccattggtggtggatgggttgt 617908  T
Q  267 tggataaacttaaa 280  Q
    ||||||||||||||    
T  617909 tggataaacttaaa 617922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 399
Target Start/End: Original strand, 617248 - 617336
Alignment:
Q  311 aggagtattccaactcttaagttgacttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggtgga 399  Q
    |||||||||||| |||||||||||  |||  |||||  | | || ||||||  ||||| |||||| |||||||||||||||||||||||    
T  617248 aggagtattccacctcttaagttggattcactagaaacatttgacctttcatgttgttatagtcttgagagttttccacttgtggtgga 617336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 232 - 397
Target Start/End: Complemental strand, 210610 - 210445
Alignment:
Q  232 tcttgagagttttccacctgtggtagatgggttggtggataaacttaaaaccatgactgttagaagttgcatcaagctaaggagtattccaactcttaag 331  Q
    ||||||| ||||| ||| || |||||||||||| |  ||||| ||||||||||||| | ||||| ||||||  |||||||||||||||||| |||| |||    
T  210610 tcttgagggtttttcacatgaggtagatgggtttggtgataagcttaaaaccatgagttttagaggttgcaggaagctaaggagtattccacctctcaag 210511  T
Q  332 ttgacttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggtg 397  Q
    |||| |||| |||||   || ||| |||||  ||||  ||| ||||||||||||||||||||||||    
T  210510 ttgaattcgctagaaacccttgatttttcatcttgtcataggctcgagagttttccacttgtggtg 210445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 402
Target Start/End: Complemental strand, 237195 - 237024
Alignment:
Q  231 gtcttgagagttttccacctgtggtagatgggttggtggataaacttaaaaccatgactgttagaagttgcatcaagctaaggagtattccaactcttaa 330  Q
    |||| |||||||||||||  |||||||||||||| |   |||||||||||||||||| |||||||  ||| ||||||||||||||||| ||| |||| ||    
T  237195 gtctggagagttttccacacgtggtagatgggtttggtaataaacttaaaaccatgattgttagagattgtatcaagctaaggagtatcccacctctcaa 237096  T
Q  331 gttgacttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggtggatgg 402  Q
    ||||  |||| |||||   ||  | || |||  ||||  |||||| ||||||||||||| ||||||||||||    
T  237095 gttggattcgctagaaacccttaacctctcatgttgtgatagtcttgagagttttccacctgtggtggatgg 237024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 231 - 399
Target Start/End: Complemental strand, 237054 - 236886
Alignment:
Q  231 gtcttgagagttttccacctgtggtagatgggttggtggataaacttaaaaccatgactgttagaagttgcatcaagctaaggagtattccaactcttaa 330  Q
    ||||||||||||||||||||||||| ||||||||  | |  |||||||||||| ||| |||||  |||||   | | || |||||||||||| |||| ||    
T  237054 gtcttgagagttttccacctgtggtggatgggtttcttggaaaacttaaaaccctgaatgttaatagttgtcgcgatctcaggagtattccacctctcaa 236955  T
Q  331 gttgacttcgttagaagaactcgatctttcaa-attgttttagtctcgagagttttccacttgtggtgga 399  Q
    ||||  |||  |||||||||| | | |||||| |||||| |||||| ||| |||||||| ||||||||||    
T  236954 gttggattctctagaagaacttgct-tttcaatattgttatagtcttgagcgttttccaattgtggtgga 236886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 399
Target Start/End: Complemental strand, 200124 - 200067
Alignment:
Q  342 tagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggtgga 399  Q
    ||||||||||| || ||||| |||||  |||||||||||||||||||  |||||||||    
T  200124 tagaagaactcaatttttcatattgtgatagtctcgagagttttccatctgtggtgga 200067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 402
Target Start/End: Complemental strand, 236830 - 236742
Alignment:
Q  314 agtattccaactcttaagttgacttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggtggatgg 402  Q
    ||||| ||| |||| ||||||  ||| |||||| ||||  | ||||||||||||| ||| ||| |||||||||||  ||||||||||||    
T  236830 agtataccagctctcaagttggattccttagaaaaacttaacctttcaaattgttgtaggctcaagagttttccatgtgtggtggatgg 236742  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 402
Target Start/End: Original strand, 12591331 - 12591462
Alignment:
Q  271 taaacttaaaaccatgactgttagaagttgcatcaagctaaggagtattccaactcttaagttgacttcgttagaagaactcgatctttcaaattgtttt 370  Q
    ||||||||||||||||| | ||||| |||||    || |||||||  ||||| |||| ||||||  |||| ||||| |||| || ||||||||||||| |    
T  12591331 taaacttaaaaccatgagtattagaggttgccatgagttaaggagacttccacctctcaagttggattcgctagaaaaacttgacctttcaaattgttat 12591430  T
Q  371 agtctcgagagttttccacttgtggtggatgg 402  Q
    |  |||||||||||| ||  ||||| ||||||    
T  12591431 atgctcgagagtttttcaagtgtggcggatgg 12591462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 12591236 - 12591348
Alignment:
Q  35 atacctgacatatctggtcttgtaaatttagaagaactttcttttcaagattgtgtgaatttaatcacagtcgatgactccgttgggtttctgggtaatc 134  Q
    |||||||| ||||||| ||||  ||||||||||||| ||||  |||||||||||| | |  |||| ||| | ||| |||| ||||| ||| || |||| |    
T  12591236 atacctgatatatctgatctttcaaatttagaagaattttcaattcaagattgtgaggaactaattacaattgataactcggttggttttttgcgtaaac 12591335  T
Q  135 ttaaaaccttgag 147  Q
    |||||||| ||||    
T  12591336 ttaaaaccatgag 12591348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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