View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_low_21 (Length: 410)
Name: NF8020_low_21
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 43 - 391
Target Start/End: Complemental strand, 16329957 - 16329609
Alignment:
| Q |
43 |
aagagtttgatgacaataactgttattcattgcaagaactatttcaaagttcatttttctcttacgcgataaatgttgatcaagtgagccattgcaaaca |
142 |
Q |
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| T |
16329957 |
aagagtttgatgacaataactgttattcattgcaagaactatttcaaagttcatttttctcttacgcgataaatgttgatcaagtgagccattgcaaaca |
16329858 |
T |
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| Q |
143 |
aattcatatacaagaaatctgttctttccctccgaacaagatcctagcagcatgaccacattttcatgtattgctttgttgagtgcattaacttcagatt |
242 |
Q |
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| T |
16329857 |
aattcatatacaagaaatctgttctttccctccgaacaagatcctagcagcatgaccacattttcatgtattgctttgttgagtgcattaacttcagatt |
16329758 |
T |
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| Q |
243 |
tgaattctttctctccttggaggcttgcaaatttatgtttcttaacagcaatcttaagtccttgcatctttccccaataaacggaaccaaatccaccttc |
342 |
Q |
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| T |
16329757 |
tgaattctttctctccttggaggcttgcaaatttatgtttcttaacagcaatcttgagtccttgcatctttccccaataaaccgaaccgaatccgccttc |
16329658 |
T |
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| Q |
343 |
tgacaaatagttctttggcgaaaaaccatgcgttgcttcatgcagctcc |
391 |
Q |
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| T |
16329657 |
tgacaaatagttcttgggagaaaaaccatgtgttgcttcatgcagctcc |
16329609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 110 - 294
Target Start/End: Original strand, 2971062 - 2971246
Alignment:
| Q |
110 |
gataaatgttgatcaagtgagccattgcaaacaaattcatatacaagaaatctgttctttccctccgaacaagatcctagcagcatgaccacattttcat |
209 |
Q |
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| T |
2971062 |
gatagatgttgatcaagtgagccattgcagacatactcataaacaagaagtcgattatttccttctgaacatgaacctaaaagcatgacaacattctcat |
2971161 |
T |
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| Q |
210 |
gtattgctttgttgagtgcattaacttcagatttgaattctttctctccttggaggcttgcaaatttatgtttcttaacagcaat |
294 |
Q |
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| T |
2971162 |
gtcttgcttttctaagtacattaacttcagacctaaattccttctctccttggaagcttgcacttttatgttgcttaacagcaat |
2971246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 240
Target Start/End: Original strand, 2926164 - 2926299
Alignment:
| Q |
105 |
tacgcgataaatgttgatcaagtgagccattgcaaacaaattcatatacaagaaatctgttctttccctccgaacaagatcctagcagcatgaccacatt |
204 |
Q |
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| T |
2926164 |
tacgtgataaatgttggtctagtgaaccattgcagacatattcataaacaagaagcctatggtttccttcagaacatgatccaagcaacatgacaatatt |
2926263 |
T |
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| Q |
205 |
ttcatgtattgctttgttgagtgcattaacttcaga |
240 |
Q |
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| T |
2926264 |
ttcatgtcttgctgtgcttaatgcatcaacttcaga |
2926299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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