View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_low_22 (Length: 410)
Name: NF8020_low_22
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 4 - 399
Target Start/End: Complemental strand, 53064578 - 53064183
Alignment:
| Q |
4 |
gagtttcgtgttaaatatagatgtttaaaggaatgaaagatcgaacatatgagtgaccaatattttggtcatttgagatatatattttacttgaaagaga |
103 |
Q |
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| T |
53064578 |
gagtgtcgtgttaaatatagatgtttaaaggaatgaaagatcgaacatatgagtgaccaatattttggtcatttgagatatatattttacttgaaagaga |
53064479 |
T |
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| Q |
104 |
agcaatcatatagagcgtgaatagatttttctaatggtgtctcagagtgctttaagagcataagcatagtcactctgatgcatatttacttctaattgag |
203 |
Q |
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| T |
53064478 |
agcaatcatatagagcgtgaatagatttttctaatggtggctcagagtgctttaagagcataagcatagtcactctgatgcatatttacttctaattgag |
53064379 |
T |
|
| Q |
204 |
aaaaatcaaaatttagtttttggaacacaaatttgcattccataattaaattttcagaatgcatataactttgttcctaaaataacagaggatgtttgtg |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
53064378 |
aaaaatcaaaatttagtttttggaacacaaatttgcattccataattaaattttcagaatgcatatacctttgttcctaaaataacagaggatgtttgtg |
53064279 |
T |
|
| Q |
304 |
ttccaaaaaacaattttgcttggagagagtcctatgtctcaagttttaaacatttcttcagtccatttccttgacgaccgatataagtaaaaactg |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53064278 |
ttccaaaaaacaattttgcttggagagagtcctatgtctcaagttttaaacatttcttcagtccatttccttgacgaccgatataagtaaaaactg |
53064183 |
T |
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