View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_low_23 (Length: 386)
Name: NF8020_low_23
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 28283303 - 28283679
Alignment:
| Q |
1 |
ctgaattgatttcgtctattatccatgcgttgtcttcttaatatcaacaaacattttacttttggtggagattatgaa-------------tgtgttgtc |
87 |
Q |
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| T |
28283303 |
ctgaattgatttcgtctattatccatgcgttgtcttcttaatatcaacaaacattttacttttggtggagattatgaaatggtattatgaatgtgttgtc |
28283402 |
T |
|
| Q |
88 |
ttcaacaaactgtatattggatatattgccatgttgtctcttaaacaaacaacatagtttttaaaacataac---gtacaataagaaaagggatccattg |
184 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28283403 |
ttcaacaaactgtatattggatatattgccatgtcgtctcttaaacaatcaacatagtttttaaaacataacaacgtacaataagaaaagggatccattg |
28283502 |
T |
|
| Q |
185 |
actctaggaataattctcgagttactccaaatccctacaaccagttttgttttaatctaatggtcttcattagttacaaattaatctaactagttgtttg |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28283503 |
actctaggaataattctcgagttactccaaatccctacaaccagttttgttttaatctaatggtcttcattagttacaaattaatctaactagttgtttg |
28283602 |
T |
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| Q |
285 |
gatcaaaatctccctgttccttggcgcctaagaagaaataggtggatgaattgcaagactactctaagaagtattgagtg |
364 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28283603 |
gatcaaaatctccctgttccttggcgcct---aagaaataggtggatgaattgcaagactactctaagaagtattgagtg |
28283679 |
T |
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