View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_low_25 (Length: 368)
Name: NF8020_low_25
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 31079565 - 31079278
Alignment:
| Q |
13 |
ataatactagtttacatgtaagatagcgtgtgcattttctttaaaatcattcatgatccttcactcaacaacttaagcttcagctttaaatttaatcaac |
112 |
Q |
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| T |
31079565 |
ataatattagtttacaggtaagatagcgtgtgcattgtctttaaaatcattcatggtccttcactcaccaacttaaacttaagctttaaatttaatcaac |
31079466 |
T |
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| Q |
113 |
caaatggaaacacctcttaatgacttgaaagaaaaggttatcactatatattggcatcaaggaggtaagaagagattaaaatctatagaattataaattt |
212 |
Q |
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| T |
31079465 |
caaatggaaacacctcttaatgacttgaaagaaaaggttatcactatatattggcatcaaggaggt---aagagactaaaatctatagaattataaattt |
31079369 |
T |
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| Q |
213 |
cttgatttggtgcctgtgattgaatttttacaccagacagnnnnnnnnnnnnnnnnggttaatacaccagacaggttttactttattattatgta |
307 |
Q |
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| T |
31079368 |
cttgatttggtgcctgtgattgaatttttacaccagacag----ttttctttttttggttaatacaccagacaggttttactttattattatgta |
31079278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 35 - 214
Target Start/End: Complemental strand, 9164656 - 9164484
Alignment:
| Q |
35 |
atagcgtgtgcattttctttaaaatcattcatgatccttcactcaacaacttaagcttcagctttaaatttaatcaaccaaatggaaacacctcttaatg |
134 |
Q |
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| T |
9164656 |
atagtgtgtgcattgtctataaaatcattcatggtccttcactcagcaacttaagcttcagctttaaatttaatcaaccaaatgaaaacaccacttaatg |
9164557 |
T |
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| Q |
135 |
acttgaaagaaaaggttatcactatatattggcatcaaggaggtaagaagagattaaaatctatagaattataaatttct |
214 |
Q |
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| T |
9164556 |
acttgaaagaaaaggttatcac----tattggcatcaaggaggt---aagagactaaaatctatagaattataaatttct |
9164484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 9164470 - 9164433
Alignment:
| Q |
275 |
tacaccagacaggttttactttattattatgtagaaag |
312 |
Q |
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| T |
9164470 |
tacaccagacaggttttaatttattattatgtagaaag |
9164433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 10672116 - 10672060
Alignment:
| Q |
23 |
tttacatgtaagatagcgtgtgcattttctttaaaatcattcatgatccttcactca |
79 |
Q |
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| T |
10672116 |
tttacaggtaagatagcttgtgcattctctataaaaccattcatgttccttcactca |
10672060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 23262224 - 23262159
Alignment:
| Q |
90 |
cttcagctttaaatttaatcaaccaaatggaaacacctcttaatgacttgaaagaaaaggttatca |
155 |
Q |
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| T |
23262224 |
cttcagttttaaacttaatcaaccattttcgaactcctcttaatgacttgaaggaaaaggttatca |
23262159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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