View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_low_30 (Length: 347)
Name: NF8020_low_30
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 18961598 - 18961326
Alignment:
| Q |
1 |
aaattacagcacctagttttccaatttgagtttcaaaaacttgaatggttgatccatcaccaaatccccagaaaagcctttcggcttctgttggcatgag |
100 |
Q |
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| T |
18961598 |
aaattacagcacctagttttccaatttgagtttcaaaaacttgaatggttgatccatcaccaaatccccagaaaagcctttcggcttctgttggcatgag |
18961499 |
T |
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| Q |
101 |
tttcctatgctttcctaggtaatgaccttgagaatcaaagaatagaacagtacagtaaagtgtgtagccattcctctctatcacacccatcactaaatgt |
200 |
Q |
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| T |
18961498 |
tttccaatgctttcctaggtaatgaccttgagaatcaaagaatagaacagtacagtaaagtgtgtagccattcctctctatcacacccatcactaaatgt |
18961399 |
T |
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| Q |
201 |
attttatactttcctgccattgctgccaatctatccacttctggacctacagaagtaagtgtaatatatatat |
273 |
Q |
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| T |
18961398 |
attttatactttcctgccattgctgccaatctatccacttctggacctacagaagtaagtgtaatatatatat |
18961326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 18967234 - 18966990
Alignment:
| Q |
7 |
cagcacctagttttccaatttgagtttcaaaaacttgaatggttgatccatcaccaaatccccagaaaagcctttcggcttctgttggcatgagtttcct |
106 |
Q |
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| T |
18967234 |
cagcacctatttttccaatttgagtttcaaatacgggaatggttgatccatccccaaatccccagataatgcgctccagtgctgttggcatgattttcct |
18967135 |
T |
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| Q |
107 |
atgctttcctaggtaatgaccttgagaatcaaagaatagaacagtacagtaaagtgtgtagccattcctctctatcacacccatcactaaatgtatttta |
206 |
Q |
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| T |
18967134 |
gtgctttcctaggtaatgaccttgagaatcaaagaagagaacggtgcagtaaagtgtgtagccatccctctctatcacacccatcactagatgtacttta |
18967035 |
T |
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| Q |
207 |
tactttcctgccattgctgccaatctatccacttctggacctaca |
251 |
Q |
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| T |
18967034 |
tactttcctgccattactgccaatctatccacctcaggacctaca |
18966990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 326
Target Start/End: Complemental strand, 18961269 - 18961197
Alignment:
| Q |
264 |
atatatatattttgttagtgaaaagag----------tgagtgactttatggagggaaatttatgatgatttt |
326 |
Q |
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| T |
18961269 |
atatatatattttgttagtgaaaagagagagttgcattgagtgattttatggagggaaatttatgatgatttt |
18961197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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