View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_low_32 (Length: 325)
Name: NF8020_low_32
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 2874291 - 2873977
Alignment:
| Q |
1 |
cgacgaacaagcaggatctcaacttaaagcgcatagacactaaaacgtgggctgcgaactggaaacttgcaggcagaaggaaactctccaagaattgtcc |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||| |||| ||||||||||||||||||||||| |
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| T |
2874291 |
cgacgaacatgcaggatctcaacttaaagcgcatagacactaaaacgttggctgcgaaacggagacttgcaagcaggaggaaactctccaagaattgtcc |
2874192 |
T |
|
| Q |
101 |
tggcatttgcatatgatgtcaagttgaagtcaaaaaatggatggtttatttagattgtctccgtatgtaatcttgtacatttattgagcatgcagaaatt |
200 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2874191 |
tggcatgtgcatatgatgttaagttgaagtcaaaaaatggatggtttatttagattgtctccgtatgtattcttgtacatttattgagcatgcagaaatt |
2874092 |
T |
|
| Q |
201 |
cgggccaaagatggtacatatgatgtgaattgtgtgttgatgtttcnnnnnnncttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgag |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
2874091 |
cgggccaaagatggtacatatgctgtgaattgtgtgttgatgtttctttttttcttgacgcaaatgtgttgatgtttctagagtaacttagacttgtcag |
2873992 |
T |
|
| Q |
301 |
tttatagtatattct |
315 |
Q |
| |
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|||||||||| |||| |
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| T |
2873991 |
tttatagtattttct |
2873977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 2847475 - 2847230
Alignment:
| Q |
1 |
cgacgaacaagcaggatctcaacttaaagcgcatagacactaaaacgtgggctgcgaactggaaacttgcaggcagaaggaaactctccaagaattgtcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
2847475 |
cgacgaacaagcaggatctcaacttaaagcgcatagacactaaaacgttggctgcgaaccggaaacttgcatgcagaaggaaactctccaagaattgtcc |
2847376 |
T |
|
| Q |
101 |
tggcatttgcatatgatgtcaagttgaagtcaaaaaatggatggtttatttagattgtctccgtatgtaatcttgtacatttattgagcatgcagaaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
2847375 |
tggcatttgcatatgatgtcaagttgaagtcaaaaaatggatggtttatttagattgtctccatatctaatcttgtacatttattgagcatgcagaaatt |
2847276 |
T |
|
| Q |
201 |
cgggccaaagatggtacatatgatgtgaattgtgtgttgatgtttc |
246 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2847275 |
cgggccaaagatggtacatatgctgtgaattgtgtgttgatgtttc |
2847230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 3160721 - 3160966
Alignment:
| Q |
1 |
cgacgaacaagcaggatctcaacttaaagcgcatagacactaaaacgtgggctgcgaactggaaacttgcaggcagaaggaaactctccaagaattgtcc |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||| ||||||||||||||||||||||| |
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| T |
3160721 |
cgacgaacaagcaggatctcaacttaaagcgcatagacactaaaacgttggctgcgaaccggaaacttgcatgcaggaggaaactctccaagaattgtcc |
3160820 |
T |
|
| Q |
101 |
tggcatttgcatatgatgtcaagttgaagtcaaaaaatggatggtttatttagattgtctccgtatgtaatcttgtacatttattgagcatgcagaaatt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
3160821 |
tggcatttgcatatgatgtcaagttgaagtcaaaaaatggatggtttatttagattgtctccatatctaatcttgtacatttattgagcatgcagaaatt |
3160920 |
T |
|
| Q |
201 |
cgggccaaagatggtacatatgatgtgaattgtgtgttgatgtttc |
246 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3160921 |
cgggccaaagatggtacatatgctgtgaattgtgtgttgatgtttc |
3160966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 105 - 315
Target Start/End: Original strand, 2797907 - 2798117
Alignment:
| Q |
105 |
atttgcatatgatgtcaagttgaagtcaaaaaatggatggtttatttagattgtctccgtatgtaatcttgtacatttattgagcatgcagaaattcggg |
204 |
Q |
| |
|
||||| || |||||| |||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |
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| T |
2797907 |
atttgaatgtgatgtgaagttgaagtcaaaaaatggatggtttatttagattgtctccttatttattcttgtacatttattgagcatgcagaaattcggg |
2798006 |
T |
|
| Q |
205 |
ccaaagatggtacatatgatgtgaattgtgtgttgatgtttcnnnnnnncttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagttta |
304 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2798007 |
ccaaagatggtacatatgctgtgaattgtgtgttgatgtttctttttttcttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagttta |
2798106 |
T |
|
| Q |
305 |
tagtatattct |
315 |
Q |
| |
|
|||||| |||| |
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|
| T |
2798107 |
tagtattttct |
2798117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 146 - 315
Target Start/End: Original strand, 3146180 - 3146349
Alignment:
| Q |
146 |
ttatttagattgtctccgtatgtaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtacatatgatgtgaattgtgtgttgatgttt |
245 |
Q |
| |
|
||||||| |||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3146180 |
ttatttaaattgtctccgcatctaatcttgtacatttattgagcatggagaaattcgggccaaagatggtacatatgatgtgaattgtgtgttgatgttt |
3146279 |
T |
|
| Q |
246 |
cnnnnnnncttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagtttatagtatattct |
315 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3146280 |
gtttttttcttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagtttatagtattttct |
3146349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 146 - 315
Target Start/End: Complemental strand, 2888406 - 2888237
Alignment:
| Q |
146 |
ttatttagattgtctccgtatgtaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtacatatgatgtgaattgtgtgttgatgttt |
245 |
Q |
| |
|
||||||| ||||||| || || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2888406 |
ttatttaaattgtcttcgcatctaatcttgtacatttattgagcatggagaaattcgggccaaagatggtacatatgatgtgaattgtgtgttgatgttt |
2888307 |
T |
|
| Q |
246 |
cnnnnnnncttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagtttatagtatattct |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
2888306 |
gtttttttcttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagtttatagtattttct |
2888237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 2889007 - 2888860
Alignment:
| Q |
5 |
gaacaagcaggatctcaacttaaagcgcatagacactaaaacgtgggctgcgaactggaaacttgcaggcagaaggaaactctccaagaattgtcctggc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| || |||| ||||||| |||||||||||||||||| |
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| T |
2889007 |
gaacaagcaggatctcaacttaaagcgcatagacactaaaacgttggctgcgaacaggaaactttcatgcaggaggaaacagtccaagaattgtcctggc |
2888908 |
T |
|
| Q |
105 |
atttgcatatgatgtcaagttgaagtcaaaaaatggatggtttattta |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2888907 |
atttgcatatgatgtcaagttgaagtcaaaaaatggatggtttattta |
2888860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 152
Target Start/End: Original strand, 3145852 - 3146002
Alignment:
| Q |
3 |
acgaacaagcaggatctcaacttaaagcgcatagacactaaaacgtgggctgcgaactggaaacttgcaggcagaaggaaactctccaagaattgtcctg |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| || |||| ||||||| |||||||||||||||| |
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| T |
3145852 |
acgaacaagcaggatctcaacttaaagcgcatagacactaaaacgttggctgcgaaccggaaactttcatgcaggaggaaaccgtccaagaattgtcctg |
3145951 |
T |
|
| Q |
103 |
gcatttgcatatgatgtcaagttgaagtc-aaaaaatggatggtttattta |
152 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3145952 |
gcatttgcatatgatgtcaagttgaagtcaaaaaaatggatggtttattta |
3146002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 3160953 - 3161003
Alignment:
| Q |
265 |
tgtgttgatgtttctagagtaacttggacttgtgagtttatagtatattct |
315 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
3160953 |
tgtgttgatgtttctagagtaacttagacttgtgagtttatagtattttct |
3161003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 2847243 - 2847193
Alignment:
| Q |
265 |
tgtgttgatgtttctagagtaacttggacttgtgagtttatagtatattct |
315 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||| |||| |
|
|
| T |
2847243 |
tgtgttgatgtttctagagtaacttagacatgtgagtttatagtattttct |
2847193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 2797826 - 2797866
Alignment:
| Q |
19 |
tcaacttaaagcgcatagacactaaaacgtgggctgcgaac |
59 |
Q |
| |
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||||||||||||||||||||||| |||||| | |||||||| |
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| T |
2797826 |
tcaacttaaagcgcatagacactgaaacgttgtctgcgaac |
2797866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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