View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_low_33 (Length: 318)
Name: NF8020_low_33
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 14 - 299
Target Start/End: Complemental strand, 14498255 - 14497970
Alignment:
| Q |
14 |
atatttggatatttttcatgtttgcaattgtcaaaagagctctttgtagaagcttatgaaattataggatagcatcatcttttgattcatcatcccttcg |
113 |
Q |
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| T |
14498255 |
atatttggatatttttcatgtttgcaattgtcaaaagagctctttgtagaagcttatgaaattataggatagcatcatcttttgattcatcatcccttcg |
14498156 |
T |
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| Q |
114 |
nnnnnnnnctatactaatacgtaccatacattatactccataatattctatggtttcaccaaatttgcc--nnnnnnnntaaattgcacatagaatattc |
211 |
Q |
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| T |
14498155 |
aaaaaaacctataataatccgtaccatatattacactccataatattctatggtttcaccaaatttgcccaaaaaaaataaaattgcacatagaatattc |
14498056 |
T |
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| Q |
212 |
aaaccatgaatatggattgagtaataaatggtaatcgtgaattattcacnnnnnnnngaaagaaagaaaccataaatattgtcagaat |
299 |
Q |
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| T |
14498055 |
aaaccatgaatatggattgagtaataaatggtaatcgtaaattattcac--aaaaaagaaagaaagaaaccataaatattgtcagaat |
14497970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 19378674 - 19378726
Alignment:
| Q |
62 |
gaagcttatgaaattataggatagcatcatcttttgattcatc-atcccttcg |
113 |
Q |
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| T |
19378674 |
gaagcttatgaaatcataggatagcatcattttttgattcatcaatcccttcg |
19378726 |
T |
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