View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_low_34 (Length: 313)
Name: NF8020_low_34
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 298
Target Start/End: Complemental strand, 28321115 - 28320825
Alignment:
| Q |
8 |
ttggtggtatgaagatttatgtttaataagtttgccattatataaaagacttattgtatcaattgaatcaaaaggtatgaaacctgagaatgttgctgca |
107 |
Q |
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| T |
28321115 |
ttggtggtatgaagatttatgtttaataagtttgccattatataaaagacttattgtatcaattgaatcaaaaggtatgaaacctgagaatgttgctgca |
28321016 |
T |
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| Q |
108 |
tcattaatatgttatcttaggagatatatacctttgatgaatagacaatcaagtttcaatgacaaaactagtgttagtcaagggacaacaccaagtagaa |
207 |
Q |
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| T |
28321015 |
tcattaatatgttatcttaggagatatatacctttgatgaatagacaatcaagtttcaatgacaaaactagtgttagtcaagggacaacaccaagtagaa |
28320916 |
T |
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| Q |
208 |
gttcagaaggaaatcaaagggcattattggaagaaattgtagggttgattcctaatnnnnnnngtgtaatcccttctaagtatcttcttag |
298 |
Q |
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| T |
28320915 |
gttcagaaggaaatcaaagggcattattggaagaaattgtagggttgattcctaataaaaaaagtgtaatcccttctaagtatcttcttag |
28320825 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 166
Target Start/End: Original strand, 5949910 - 5950034
Alignment:
| Q |
42 |
ccattatataaaagacttattgtatcaattgaatcaaaaggtatgaaacctgagaatgttgctgcatcattaatatgttatcttaggagatatatacctt |
141 |
Q |
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||||||||||||||| | ||| | | |||||||||||||| |||||| | |||| | |||||||||| | |||| ||| |||||| | | | | || | |
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| T |
5949910 |
ccattatataaaagattgattttggctattgaatcaaaaggaatgaaatcggagactattgctgcatctcttatatattaccttaggcggtttcttccct |
5950009 |
T |
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| Q |
142 |
tgatgaatagacaatcaagtttcaa |
166 |
Q |
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| T |
5950010 |
tgatgaatagacaatcaagtttcaa |
5950034 |
T |
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