View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8020_low_38 (Length: 288)

Name: NF8020_low_38
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8020_low_38
NF8020_low_38
[»] chr4 (1 HSPs)
chr4 (1-288)||(39783859-39784146)


Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 39784146 - 39783859
Alignment:
Q  1 agagaatataactataatgatgttgcatcttcaagcatcctttttaaattgagtatatgaaaagaagagaaaaatgttgtcttgtgatcatacattcaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39784146 agagaatataactataatgatgttgcatcttcaagcatcctttttaaattgagtatatgaaaagaagagaaaaatgttgccttgtgatcatacattcaaa 39784047  T
Q  101 tatttcaataattgaaagaatagtttgagaaatgacatcatatacacataagagaagctattattatggtaggaaaatactaacaggtaaagttgtcggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39784046 tatttcaataattgaaagaatagtttgagaaatgacatcatatacacataagagaagctattattatggtaggaaaatactaacaggtaaagttgtcggg 39783947  T
Q  201 agatannnnnnnnnnnnnngatgagtttcattcaaatgtggtccaaagtattggaaggagacaaattatactaaaaggaagtagatgc 288  Q
    |||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39783946 agatattttttatttttttgatgagtttcattcaaatgtggtccaaagtattggaaggagacaaattatactaaaaggaagtagatgc 39783859  T

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