View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8020_low_39 (Length: 283)
Name: NF8020_low_39
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_low_39 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 222
Target Start/End: Original strand, 45973280 - 45973495
Alignment:
| Q |
10 |
atcaacagtgtagattcc--atctctaatcttttcactttacacccgcagcacaatatattcaacaaggaaaaacccatgagcttaagcgcatcgttcag |
107 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45973280 |
atcaacagtgtagattccccatctctaatcttttcactttacacccgcaacacaatatattcaacaagggaaaacccatgagcttaagcgcatcgttcag |
45973379 |
T |
|
| Q |
108 |
gttgagaaaaattggaaacctttgcctaattgatgcgttttatccat-aaggattccaattcattacattgttttccattacaatttaacaatttaccag |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45973380 |
gttgagaaaaattggaaacctttgcctaattgatgcgttttatccatcaaggattccaattcattacattgttttccattacaatttatcaatttaccag |
45973479 |
T |
|
| Q |
207 |
tgaggggttctttgag |
222 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
45973480 |
tgaggggttctttgag |
45973495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University