View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_low_4 (Length: 715)
Name: NF8020_low_4
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_low_4 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 8695746 - 8696183
Alignment:
| Q |
1 |
taacatgaactcttcttctcactcttctccagcatcactttaccagattctcggtatatcagcaggtgcttccaatcaagaaataaaggcggcataccgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8695746 |
taacatgaactcttcttctcactcttctccagcatcactttaccagattctcggtatatcagcaggtgcttccaatcaagaaataaaggcggcataccgg |
8695845 |
T |
|
| Q |
101 |
cgacttgcaagagtctgccatcctgatgttgcggcaattgatcggaaaaactcatcggcggatgatttcatgaagattcactctgcatattccacgcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8695846 |
cgacttgcaagagtctgccatcctgatgttgcggcaattgatcggaaaaactcatcggcggatgatttcatgaagattcactctgcatattccacgcttt |
8695945 |
T |
|
| Q |
201 |
cagatccagataaacgtgctaattatgatcggagtcttttccggcaacaacgacggccgttgtcaacgatggtgtattctggatactcaagtcaaaaatg |
300 |
Q |
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| T |
8695946 |
cggatccagataaacgtgctaattatgatcggagtcttttccggcaacaactacggccgttgtcaacgatggtgtcttctggatactcaagtcgaaaatg |
8696045 |
T |
|
| Q |
301 |
ggaaacggatcagtgttggtagaaaattgactaacagatgagggaagtgcagttattaacgaagcatcatgcctcaagtgtaaattattaactaattact |
400 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8696046 |
ggaaacggatcagtgttggtagtaaattgactaacagatgagggaagtgcagttattaacgaagcatcatgcctcaagtgtaaattattaactaattact |
8696145 |
T |
|
| Q |
401 |
aattagggatagtaactactacagtaattagttctttt |
438 |
Q |
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||||||||||||||||||||| |||||||||||||||| |
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| T |
8696146 |
aattagggatagtaactactatagtaattagttctttt |
8696183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 2 - 322
Target Start/End: Original strand, 8707450 - 8707770
Alignment:
| Q |
2 |
aacatgaactcttcttctcactcttctccagcatcactttaccagattctcggtatatcagcaggtgcttccaatcaagaaataaaggcggcataccggc |
101 |
Q |
| |
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||||||||||||| |||| |||||||||| | ||||| || |||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||| |
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| T |
8707450 |
aacatgaactctttttcttactcttctcctggatcacactatgagatcctcggtatatcagcaggtgcttcgaatcaagaaatcaaggcggcctaccggc |
8707549 |
T |
|
| Q |
102 |
gacttgcaagagtctgccatcctgatgttgcggcaattgatcggaaaaactcatcggcggatgatttcatgaagattcactctgcatattccacgctttc |
201 |
Q |
| |
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||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8707550 |
gacttgcaagagtctgccaccctgatgtggcggcgattgatcggaaaaactcatcggcggatgatttcatgaagattcactctgcatattcgacgctttc |
8707649 |
T |
|
| Q |
202 |
agatccagataaacgtgctaattatgatcggagtcttttccggcaacaacgacggccgttgtcaacgatggtgtattctggatactcaagtcaaaaatgg |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| || |||||||||| |||||| |
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| T |
8707650 |
ggatccagataaacgtgctaattatgatcggagtcttttccggcaacaacgacggccgttgtcgacgatggtgtcttccggctactcaagtcgcaaatgg |
8707749 |
T |
|
| Q |
302 |
gaaacggatcagtgttggtag |
322 |
Q |
| |
|
|| || ||||||||||||||| |
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| T |
8707750 |
gagaccgatcagtgttggtag |
8707770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 437 - 638
Target Start/End: Original strand, 8696207 - 8696396
Alignment:
| Q |
437 |
ttagttagctttcagattttgtatattacaaagtaaattagt---atctgaaaaagtgtattctgggaagtgtttcccctacaatacaagagaaattact |
533 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8696207 |
ttagttagctttcagattttgtatattacaaagtaaagtagtagtatctgaaaaagtgtattctgggaagtgtttcccctacaatacaagagaaattact |
8696306 |
T |
|
| Q |
534 |
gaccaattattcttctagtgtatcttactatatatttactcgggtcaacaaaaattaatctgtctgatccaagttttaaacatcatacatcaatttttgt |
633 |
Q |
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| T |
8696307 |
gaccaattattcttctagtgtatcttactat---------------aacaaaaattaatctgtctgatccaagttttaaacatcatacatcaatttttgt |
8696391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 50 - 242
Target Start/End: Original strand, 8726915 - 8727107
Alignment:
| Q |
50 |
ctcggtatatcagcaggtgcttccaatcaagaaataaaggcggcataccggcgacttgcaagagtctgccatcctgatgttgcggcaattgatcggaaaa |
149 |
Q |
| |
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|||||||||||||||| ||| ||||| |||||||| ||||| || |||||||||||||||||| ||||||| ||||| || ||| | |||||||||||| |
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| T |
8726915 |
ctcggtatatcagcagctgcctccaaccaagaaatcaaggcagcgtaccggcgacttgcaagactctgccaccctgacgtggcgtcggttgatcggaaaa |
8727014 |
T |
|
| Q |
150 |
actcatcggcggatgatttcatgaagattcactctgcatattccacgctttcagatccagataaacgtgctaattatgatcggagtcttttcc |
242 |
Q |
| |
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|||| ||||| |||||||||||||| ||||| ||| || || || || |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8727015 |
actcgtcggcagatgatttcatgaaaattcaggttgcttactctacactctcagatcctgataaacgtgctaattatgatcggagtcttttcc |
8727107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 634 - 715
Target Start/End: Original strand, 8696415 - 8696496
Alignment:
| Q |
634 |
tacgtagaaccataattattcttctagtctctctctgctatgaagacagagagctagctcctcacataactccaaactcgat |
715 |
Q |
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| T |
8696415 |
tacgtagaaccataattattcttctagtctctctctgctatgaagacagagagctagctcctcacataacttcaaattcgat |
8696496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 32039682 - 32039796
Alignment:
| Q |
86 |
aaggcggcataccggcgacttgcaagagtctgccatcctgatgttgcggcaattgatcggaaaaactcatcggcggatgatttcatgaagattcactctg |
185 |
Q |
| |
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|||||||| ||||| |||||||| || || | ||| |||||||| ||||| |||||||||| || ||||||||||| |||||||||||||| ||| |
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| T |
32039682 |
aaggcggcctaccgacgacttgccagggtttcccaccctgatgtggcggcggttgatcggaaggtttcttcggcggatgagttcatgaagattcatgctg |
32039781 |
T |
|
| Q |
186 |
catattccacgcttt |
200 |
Q |
| |
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| |||||||| |||| |
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| T |
32039782 |
cgtattccactcttt |
32039796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 576 - 634
Target Start/End: Original strand, 312752 - 312810
Alignment:
| Q |
576 |
ggtcaacaaaaattaatctgtctgatccaagttttaaacatcatacatcaatttttgtt |
634 |
Q |
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||||||||||| ||||| | |||||||||| |||||||| ||||||||||||||||| |
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| T |
312752 |
ggtcaacaaaagttaatgtatctgatccaaattttaaactagatacatcaatttttgtt |
312810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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