View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_low_40 (Length: 263)
Name: NF8020_low_40
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 30234548 - 30234291
Alignment:
| Q |
1 |
ttcagctaacaagatatgttttaaccaacgaattgttgagtcttaatgctatgtgttaggtctatgtcaatacaataaattctctcctagatgaatacta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30234548 |
ttcagctaacaagatatgttttaaccaacgaattgttgagtcttaatgctatgtgttaggtctatgtcaatacaataaattctctcctagatgaatacta |
30234449 |
T |
|
| Q |
101 |
tgtcattgataatagtggtataataaagaccaggatataagagttatgtttcttttaaagcaagnnnnnnnnnnnnctcatttaagatgaggaaaagaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||| |
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| T |
30234448 |
tgtcattgataatagtggtataataaagaccaggatataagagttatgtttcttttaaagcaagaacaagaaaaaactcatttaagatgaagaaatgaaa |
30234349 |
T |
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| Q |
201 |
actagaaggaatttaacggatagagcatcatctgttgcaaaatagtgatgtccatctc |
258 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| | || ||||||| |
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| T |
30234348 |
actagaaggaatttaatggatagagcatcatctgttgcaaaatagggttggccatctc |
30234291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 69 - 242
Target Start/End: Complemental strand, 31700743 - 31700573
Alignment:
| Q |
69 |
aatacaataaattctctcctagatgaatactatgtcattgataatagtggtataataaagaccaggatataagagttatgtttcttttaaagcaagnnnn |
168 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||| |
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| T |
31700743 |
aatacaataaattctctcttagatgaatactat--cattgataatagtggtattatgaagaccaggagataagagttatgtttcttttaaagcaag-aaa |
31700647 |
T |
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| Q |
169 |
nnnnnnnnctcatttaagatgaggaaaagaaaactagaaggaatttaacggatagagcatcatctgttgcaaaa |
242 |
Q |
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| T |
31700646 |
aaaaagatctcatttaagatgaagaaatgaaaagtagaaggaatttaatggacaaagcattatctgttgcaaaa |
31700573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 31682675 - 31682576
Alignment:
| Q |
30 |
gaattgttgagtcttaatgctatgtgttaggtctatgtcaatacaataaattctctcctagatgaatactatgtcattgataatagtggtataataaaga |
129 |
Q |
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||||||||||||||||||||| |||||||||| |||||||| |||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31682675 |
gaattgttgagtcttaatgctgtgtgttaggtttatgtcaacacaagaaattctctcttagatgaatgctatgtcattgataatagtggtataataaaga |
31682576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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