View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_low_42 (Length: 254)
Name: NF8020_low_42
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 2683451 - 2683238
Alignment:
| Q |
17 |
taaatgtaaatgtaccaattgcacccgaaattttacttcagtattacaatctacacaatgtaaatgtacctgtagcttggcttttacatttatgcagaat |
116 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2683451 |
taaatgtaaatgtaccaactgcacccgaaattttacttcagtattacaatctacacaatgtaaatgtacctgtagcttggcttttacatttatgcagaat |
2683352 |
T |
|
| Q |
117 |
attaataatgtatgtgatttcaaaccatgcccttattgatagctataaacgacttggctctgttgtgaattaacttttccagatttcttatggtttttaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2683351 |
attaataatgtatgtgatttcaaaccatgcccttattgatagctataaacgacttggctctgttgtgaattaacttttccagatttcttatggtttttaa |
2683252 |
T |
|
| Q |
217 |
atgaagatactaac |
230 |
Q |
| |
|
|||||||||||||| |
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|
| T |
2683251 |
atgaagatactaac |
2683238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 230
Target Start/End: Original strand, 34217295 - 34217511
Alignment:
| Q |
14 |
atgtaaatgtaaatgtaccaattgcacccgaaattttacttcagtattacaatctacacaatgtaaatgtacctgtagcttggcttttacatttatgcag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34217295 |
atgtaaatgtaaatgtaccaattgcacccgaaattttacttcagtattacaatctacacaatgtaaatgtacctgtagcttggcttttacatttatgcag |
34217394 |
T |
|
| Q |
114 |
aatattaataatgtatgtgatttcaaaccatgcccttattgatagctataaacgacttggctctgttgtgaattaacttttccagatttcttatggtttt |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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|
| T |
34217395 |
aatattaataatgtatgtgatttcaaaccatgcccttattgatagctataaacgacttggctctgttgtgaattaacttttctagattttttatggtttt |
34217494 |
T |
|
| Q |
214 |
taaatgaagatactaac |
230 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
34217495 |
taaatgaagatactaac |
34217511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 82 - 226
Target Start/End: Original strand, 10242146 - 10242292
Alignment:
| Q |
82 |
gtacctgtagcttggcttttacatttatgcagaatattaataatgtat--gtgatttcaaaccatgcccttattgatagctataaacgacttggctctgt |
179 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||| || ||||||| ||| |||||| ||||| ||||||||||||||||||||||| |||||| ||||| |
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|
| T |
10242146 |
gtacctgtagcttgcctttaacatttatgcagagtactaataatatatatgtgattccaaactatgcccttattgatagctataaatgacttgaatctgt |
10242245 |
T |
|
| Q |
180 |
tgtgaattaacttttccagatttcttatggtttttaaatgaagatac |
226 |
Q |
| |
|
|||||||||||||||||| | || ||||| ||||||||| ||||||| |
|
|
| T |
10242246 |
tgtgaattaacttttccaaaattgttatgttttttaaattaagatac |
10242292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 10241785 - 10241838
Alignment:
| Q |
18 |
aaatgtaaatgtaccaattgcacccgaaattttacttcagtattacaatctaca |
71 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10241785 |
aaatgtaaatgtaccaactgcacccgaaattttacttcagtattacaatctaca |
10241838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 5479861 - 5480073
Alignment:
| Q |
18 |
aaatgtaaatgtaccaattgcacccgaaattttacttcagtattacaatctacacaatgtaaatgtacctgtagcttggcttttacatttatgcagaata |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5479861 |
aaatgtaaatgtaccaactgcacccgaaattttacttcagtattacaatctacacaatgtaaatgtacctgtagcttggcttttacatttatgcagaata |
5479960 |
T |
|
| Q |
118 |
ttaataatgtatgtgatttcaaaccatgcccttattgatagctataaacgacttggctctgttgtgaattaacttttccagatttcttatggtttttaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5479961 |
ttaataatgtatgtgatttcaaaccatgcccttattgatagctataaacgacttggctctgttgtgaattaacttttccagatttcttatggtttttaaa |
5480060 |
T |
|
| Q |
218 |
tgaagatactaac |
230 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5480061 |
tgaagatactaac |
5480073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 45006876 - 45006664
Alignment:
| Q |
18 |
aaatgtaaatgtaccaattgcacccgaaattttacttcagtattacaatctacacaatgtaaatgtacctgtagcttggcttttacatttatgcagaata |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45006876 |
aaatgtaaatgtaccaactgcacccgaaattttacttcagtattacattctacacaatgtaaatgtacctgtagcttggcttttacatttatgcagaata |
45006777 |
T |
|
| Q |
118 |
ttaataatgtatgtgatttcaaaccatgcccttattgatagctataaacgacttggctctgttgtgaattaacttttccagatttcttatggtttttaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45006776 |
ttaataatgtatgtgatttcaaaccatgcccttattgatagctataaacgacttggctctgttgtgaattaacttttccagatttcttatggtttttaaa |
45006677 |
T |
|
| Q |
218 |
tgaagatactaac |
230 |
Q |
| |
|
||||||||||||| |
|
|
| T |
45006676 |
tgaagatactaac |
45006664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 25575557 - 25575658
Alignment:
| Q |
18 |
aaatgtaaatgtaccaattgcacccgaaattttacttcagtattacaatctacacaatgtaaatgtacctgtagcttggcttttacatttatgcagaata |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25575557 |
aaatgtaaatgtaccaactgcacccgaaattttacttcactattacaatctaaacaatttaaatgtacctatagcttggcttttacatttatgcagaata |
25575656 |
T |
|
| Q |
118 |
tt |
119 |
Q |
| |
|
|| |
|
|
| T |
25575657 |
tt |
25575658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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